cluster # 1454

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Schistosoma mansoni
cluster # 1454 cluster # 1454 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1454#0 length = 291 sequences # 1

consensus_1454#1 length = 192 sequences # 1

consensusID : consensus_1454#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [GTCCAGTTTCTTAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAAAGACAACCGTAAAATAATACCTCAAACAGGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTTTTGGAAAACGGAATAAATAGTTGACGATTGACAATAAAGAACAAAATGACATTAAAGTGATAGTGAAACTGATAGAAGATAGGTTGATGATGAAAGTTTGATGAGAAAACATGAGAATTTGAAGCGGGAAACTGAGGTCACTATTGATCAGTGAAGATCAGATATTTAGTAGGA]

[+] EMBL BG931024             [GTCCAGTTTCTTAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAAAGACAACCGTAAAATAATACCTCAAACAGGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTTTTGGAAAACGGAATAAATAGTTGACGATTGACAATAAAGAACAAAATGACATTAAAGTGATAGTGAAACTGATAGAAGATAGGTTGATGATGAAAGTTTGATGAGAAAACATGAGAATTTGAAGCGGGAAACTGAGGTCACTATTGATCAGTGAAGATCAGATATTTAGTAGGA]




>consensus_1454#0
GTCCAGTTTCTTAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAAAGACAACC
GTAAAATAATACCTCAAACAGGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTTTTG
GAAAACGGAATAAATAGTTGACGATTGACAATAAAGAACAAAATGACATTAAAGTGATAG
TGAAACTGATAGAAGATAGGTTGATGATGAAAGTTTGATGAGAAAACATGAGAATTTGAA
GCGGGAAACTGAGGTCACTATTGATCAGTGAAGATCAGATATTTAGTAGGA

consensusID : consensus_1454#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 192
fasta sequence

                              [TTCCAGTCTCTGAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAATCACCACCGTATACTAATACCTCAAACACGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTGGTGGAAAACGGACTATATAGTTGACGATTGACCATCAAAAACTAAACGACGTTCTAGTGATACTGGATCTGATAC]

[+] EMBL BG931286             [TTCCAGTCTCTGAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAATCACCACCGTATACTAATACCTCAAACACGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTGGTGGAAAACGGACTATATAGTTGACGATTGACCATCAAAAACTAAACGACGTTCTAGTGATACTGGATCTGATAC]




>consensus_1454#1
TTCCAGTCTCTGAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAATCACCACC
GTATACTAATACCTCAAACACGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTGGTG
GAAAACGGACTATATAGTTGACGATTGACCATCAAAAACTAAACGACGTTCTAGTGATAC
TGGATCTGATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1454#0      GTCCAGTTTCTTAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAAAGACAACC 60
consensus_1454#1      TTCCAGTCTCTGAATCTGTGATAGGTACAACATTACAGCAATAAATCATTAATCACCACC 60
                       ****** *** ****************************************  ** ***

consensus_1454#0      GTAAAATAATACCTCAAACAGGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTTTTG 120
consensus_1454#1      GTATACTAATACCTCAAACACGTCATGAAGAGTAACTAGTCTTGTACAAAACAGCTGGTG 120
                      *** * ************** ***********************************  **

consensus_1454#0      GAAAACGGAATAAATAGTTGACGATTGACAATAAAGAACAAAATGACATTAAAGTGATAG 180
consensus_1454#1      GAAAACGGACTATATAGTTGACGATTGACCATCAAAAACTAAACGACGTTCTAGTGATAC 180
                      ********* ** **************** ** ** *** *** *** **  ******* 

consensus_1454#0      TGAAACTGATAGAAGATAGGTTGATGATGAAAGTTTGATGAGAAAACATGAGAATTTGAA 240
consensus_1454#1      TGGATCTGATAC------------------------------------------------ 192
                      ** * ******                                                 

consensus_1454#0      GCGGGAAACTGAGGTCACTATTGATCAGTGAAGATCAGATATTTAGTAGGA 291
consensus_1454#1      ---------------------------------------------------