These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [CTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAAAGTTTTGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGTCTCTCTTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCAGGCCAACGAAATAAATCATTTAGAATAGTATCCTTTGATGATTTGACCAAATTTATTTTCGACCGATAATGTTGACTGGTTAGCGCTGTAGTTGGCAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAAAACTGGTATTATCAGTGTTAGTAGTATTGTGGTTACTATGATTGTGATCGTCATCCAAATGACAAGTACCATTTGC] [+] EMBL CD124740 [CTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAAAGTTTTGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGTCTCTCTTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCAGGCCAACGAAATAAATCATTTAGAATAGTATCCTTTGATGATTTGACCAAATTTATTTTCGACCGATAATGTTGACTGGTTAGCGCTGTAGTTGGCAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAAAACTGGTATTATCAGTGTTAGTAGTATTGTGGTTACTATGATTGTGATCGTCATCCAAATGACAAGTACCATTTGC] consensusID : consensus_1467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [AAATTCTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAAAGTTTTGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGTCTCTCTTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCGGGCCAACGAAATAAATCATTTAGAATAGTATCCTTTGATGATTTGACCAAATTGTTTTCGACCGATAATGTTGACTGGTTAGCGCTGTAGATGGGCAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAAAACTGGGATTTTATTAACTACCATAATAC] [+] EMBL BE431226 [AAATTCTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAAAGTTTTGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGTCTCTCTTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCGGGCCAACGAAATAAATCATTTAGAATAGTATCCTTTGATGATTTGACCAAATTGTTTTCGACCGATAATGTTGACTGGTTAGCGCTGTAGATGGGCAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAAAACTGGGATTTTATTAACTACCATAATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1467#0 -----CTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAA 55 consensus_1467#1 AAATTCTATAAAATGATGACATTTTAATACAAACGTAATAGATGGATCATTTTCCCATAA 60 ******************************************************* consensus_1467#0 AGTTTTGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGT 115 consensus_1467#1 AGTTTTGAAATAAGTTTTTAACTGATCTAATGCAGACAAATAATCACCGTTACGAATAGT 120 ************************************************************ consensus_1467#0 CTCTCTTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCAGGCCAACGAAATAAATC 175 consensus_1467#1 CTCTCTTAAATGTCTTCGTCTTAGTAATATATCTACAGCTTCGGGCCAACGAAATAAATC 180 ****************************************** ***************** consensus_1467#0 ATTTAGAATAGTATCCTTTGATGATTTGACCAAATTTATTTTCGACCGATAATGTTGACT 235 consensus_1467#1 ATTTAGAATAGTATCCTTTGATGATTTGACCAAATT-GTTTTCGACCGATAATGTTGACT 239 ************************************ ********************** consensus_1467#0 GGTTAGCGCTGTAGTTGG-CAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAA 294 consensus_1467#1 GGTTAGCGCTGTAGATGGGCAACTTTGATTGCTGTTCACCACCTAATTCGTCCAAAGTAA 299 ************** *** ***************************************** consensus_1467#0 AACTGGTATT--ATCAGTGTTAGTAGTATTGTGGTTACTATGATTGTGATCGTCATCCAA 352 consensus_1467#1 AACTGGGATTTTATTAACTACCATAATAC------------------------------- 328 ****** *** ** * ** ** consensus_1467#0 ATGACAAGTACCATTTGC 370 consensus_1467#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||