cluster # 1471

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Schistosoma mansoni
cluster # 1471 cluster # 1471 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1471#0 length = 98 sequences # 1

consensus_1471#1 length = 84 sequences # 1

consensusID : consensus_1471#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 98
fasta sequence

                              [GGCCCCCGGCAAGCTATCCGGTTCAATTTCAGGCTTGATTCAGGCCTGCAATCAAGCCAGCTATCCGGTTCAATGCATGATGGTGAATCAAGTGTGCC]

[+] EMBL CD060957             [GGCCCCCGGCAAGCTATCCGGTTCAATTTCAGGCTTGATTCAGGCCTGCAATCAAGCCAGCTATCCGGTTCAATGCATGATGGTGAATCAAGTGTGCC]




>consensus_1471#0
GGCCCCCGGCAAGCTATCCGGTTCAATTTCAGGCTTGATTCAGGCCTGCAATCAAGCCAG
CTATCCGGTTCAATGCATGATGGTGAATCAAGTGTGCC

consensusID : consensus_1471#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 84
fasta sequence

                              [GGCACCCCTTGATTGCAGGCTTGATTGCAGGCTTTCCAGGCTTGATTGCAGGCGCACACTTGATTCACCATCATGCATTGAACC]

[+] EMBL CD060951             [GGCACCCCTTGATTGCAGGCTTGATTGCAGGCTTTCCAGGCTTGATTGCAGGCGCACACTTGATTCACCATCATGCATTGAACC]




>consensus_1471#1
GGCACCCCTTGATTGCAGGCTTGATTGCAGGCTTTCCAGGCTTGATTGCAGGCGCACACT
TGATTCACCATCATGCATTGAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1471#0      GGCCCCCGGCAAGCTATCCGGTTCAATTTCAGGCTTGATTCAGGCCTGCAATCAAGCCAG 60
consensus_1471#1      GGCACCCCTTGA--TTGCAGGCTTGATTGCAGGCTT--TCCAGGCTTG-ATTGCAGGCGC 55
                      *** ***    *  *  * ** *  *** *******  * ***** ** * *  ** *  

consensus_1471#0      CTATCCGGTTCAATGCATGATGGTGAATCAAGTGTGCC 98
consensus_1471#1      ACACTTGATTCACCATCATGCATTGAACC--------- 84
                        *   * ****           **** *