cluster # 1473

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Schistosoma mansoni
cluster # 1473 cluster # 1473 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1473#0 length = 628 sequences # 1

consensus_1473#1 length = 531 sequences # 1

consensusID : consensus_1473#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [ATTCAATTTTTAAACATATAAGGATTACAGACAACTTTTCTAGTGGGATATTAGTTTTTTAATGAAACACCAGCTTAGGCAGCAAAGATATAAAGATATTTGGTAACAATCTATATAGAAAAACAAAATACTTTTGAAATATTTTTAATAAATCACAGCTATTAAGCTGGTAGCAGGTGGGAAGTATATGAATGTTTAAGATATTTAAGAAAGAAATTACATAGGATGAGCAATGAGTACAGAAAGACTCGTATACAGGTAAAGTATGCATTCATACTTATGGGTAAACAAATGCCAATGGTCGTGATAAAATTATCTAATAATGTCAAATATTAAATTGACTGGCAAAAATCACTTTAAGAAACTACAAAAAGTGAACTAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAAGATGTATCACAGACTTTCAGATTGTGACTCGCTATCGATCAAACACACAGATGATATGGCACAGTCGCTGTGGGCCAAACGTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTTGAACACAGGACAAGATGATCCCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGAAACCACATAAGAAGCGAAGAAGTCTTTTA]

[+] EMBL BF936841             [ATTCAATTTTTAAACATATAAGGATTACAGACAACTTTTCTAGTGGGATATTAGTTTTTTAATGAAACACCAGCTTAGGCAGCAAAGATATAAAGATATTTGGTAACAATCTATATAGAAAAACAAAATACTTTTGAAATATTTTTAATAAATCACAGCTATTAAGCTGGTAGCAGGTGGGAAGTATATGAATGTTTAAGATATTTAAGAAAGAAATTACATAGGATGAGCAATGAGTACAGAAAGACTCGTATACAGGTAAAGTATGCATTCATACTTATGGGTAAACAAATGCCAATGGTCGTGATAAAATTATCTAATAATGTCAAATATTAAATTGACTGGCAAAAATCACTTTAAGAAACTACAAAAAGTGAACTAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAAGATGTATCACAGACTTTCAGATTGTGACTCGCTATCGATCAAACACACAGATGATATGGCACAGTCGCTGTGGGCCAAACGTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTTGAACACAGGACAAGATGATCCCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGAAACCACATAAGAAGCGAAGAAGTCTTTTA]




>consensus_1473#0
ATTCAATTTTTAAACATATAAGGATTACAGACAACTTTTCTAGTGGGATATTAGTTTTTT
AATGAAACACCAGCTTAGGCAGCAAAGATATAAAGATATTTGGTAACAATCTATATAGAA
AAACAAAATACTTTTGAAATATTTTTAATAAATCACAGCTATTAAGCTGGTAGCAGGTGG
GAAGTATATGAATGTTTAAGATATTTAAGAAAGAAATTACATAGGATGAGCAATGAGTAC
AGAAAGACTCGTATACAGGTAAAGTATGCATTCATACTTATGGGTAAACAAATGCCAATG
GTCGTGATAAAATTATCTAATAATGTCAAATATTAAATTGACTGGCAAAAATCACTTTAA
GAAACTACAAAAAGTGAACTAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAAG
ATGTATCACAGACTTTCAGATTGTGACTCGCTATCGATCAAACACACAGATGATATGGCA
CAGTCGCTGTGGGCCAAACGTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTTG
AACACAGGACAAGATGATCCCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGAA
ACCACATAAGAAGCGAAGAAGTCTTTTA

consensusID : consensus_1473#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [AATTTCCTATAAATNANAGGTATTAAGNTGGTAGNAGGTGGGAAGTATATGAATGTTTAAGATATTTAAGAAAGAAATTAATAGGATGAGNAATGAGTANAGAAAGAATGGTATAGAGGTAAAGTATGGATTTATANTTATGGGTAAANAAATGGNAATGGTGGTGATAAAATTATTTAATAATGTNAAATATTAAATTGATTGTTTAAAATNACCCCCCCCACACTACAAAAAGTGAACTAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAAGATGTATCACAGACTTTCAGATTGTGACTCGCTATCGATCAAACACACAGATGATATGGCACAGTCGCTGTGGGCCAAACGTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTTGAACACAGGACAAGATGATCCCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGAAACCACATAAGAAGCGAAGAAGTCTTTTAATCCCTGTCCAAGAGCAGAGGAGTCACAAATAGCATTGGGAC]

[+] EMBL CD077078             [AATTTCCTATAAATNANAGGTATTAAGNTGGTAGNAGGTGGGAAGTATATGAATGTTTAAGATATTTAAGAAAGAAATTAATAGGATGAGNAATGAGTANAGAAAGAATGGTATAGAGGTAAAGTATGGATTTATANTTATGGGTAAANAAATGGNAATGGTGGTGATAAAATTATTTAATAATGTNAAATATTAAATTGATTGTTTAAAATNACCCCCCCCACACTACAAAAAGTGAACTAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAAGATGTATCACAGACTTTCAGATTGTGACTCGCTATCGATCAAACACACAGATGATATGGCACAGTCGCTGTGGGCCAAACGTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTTGAACACAGGACAAGATGATCCCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGAAACCACATAAGAAGCGAAGAAGTCTTTTAATCCCTGTCCAAGAGCAGAGGAGTCACAAATAGCATTGGGAC]




>consensus_1473#1
AATTTCCTATAAATNANAGGTATTAAGNTGGTAGNAGGTGGGAAGTATATGAATGTTTAA
GATATTTAAGAAAGAAATTAATAGGATGAGNAATGAGTANAGAAAGAATGGTATAGAGGT
AAAGTATGGATTTATANTTATGGGTAAANAAATGGNAATGGTGGTGATAAAATTATTTAA
TAATGTNAAATATTAAATTGATTGTTTAAAATNACCCCCCCCACACTACAAAAAGTGAAC
TAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAAGATGTATCACAGACTTTCAG
ATTGTGACTCGCTATCGATCAAACACACAGATGATATGGCACAGTCGCTGTGGGCCAAAC
GTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTTGAACACAGGACAAGATGATC
CCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGAAACCACATAAGAAGCGAAGA
AGTCTTTTAATCCCTGTCCAAGAGCAGAGGAGTCACAAATAGCATTGGGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1473#0      ATTCAATTTTTAAACATATAAGGATTACAGACAACTTTTCTAGTGGGATATTAGTTTTTT 60
consensus_1473#1      ------------------------------------------------------------
                                                                                  

consensus_1473#0      AATGAAACACCAGCTTAGGCAGCAAAGATATAAAGATATTTGGTAACAATCTATATAGAA 120
consensus_1473#1      ------------------------------------------------------------
                                                                                  

consensus_1473#0      AAACAAAATACTTTTGAAATATTTTTAATAAATCACAGCTATTAAGCTGGTAGCAGGTGG 180
consensus_1473#1      -------------------AATTTCCTATAAATNANAGGTATTAAGNTGGTAGNAGGTGG 41
                                          ****   ****** * ** ******* ****** ******

consensus_1473#0      GAAGTATATGAATGTTTAAGATATTTAAGAAAGAAATTACATAGGATGAGCAATGAGTAC 240
consensus_1473#1      GAAGTATATGAATGTTTAAGATATTTAAGAAAGAAATTA-ATAGGATGAGNAATGAGTAN 100
                      *************************************** ********** ******** 

consensus_1473#0      AGAAAGACTCGTATACAGGTAAAGTATGCATTCATACTTATGGGTAAACAAATGCCAATG 300
consensus_1473#1      AGAAAGAATGGTATAGAGGTAAAGTATGGATTTATANTTATGGGTAAANAAATGGNAATG 160
                      ******* * ***** ************ *** *** *********** *****  ****

consensus_1473#0      GTCGTGATAAAATTATCTAATAATGTCAAATATTAAATTGACTGGCAAAAATCACTTTAA 360
consensus_1473#1      GTGGTGATAAAATTATTTAATAATGTNAAATATTAAATTGATTGTTTAAAATNACCCCCC 220
                      ** ************* ********* ************** **   ***** **     

consensus_1473#0      GAA-ACTACAAAAAGTGAACTAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAA 419
consensus_1473#1      CCACACTACAAAAAGTGAACTAAGTACCGTCTGATGATAATTGAAAACTGGTAGGATAAA 280
                        * ********************************************************

consensus_1473#0      GATGTATCACAGACTTTCAGATTGTGACTCGCTATCGATCAAACACACAGATGATATGGC 479
consensus_1473#1      GATGTATCACAGACTTTCAGATTGTGACTCGCTATCGATCAAACACACAGATGATATGGC 340
                      ************************************************************

consensus_1473#0      ACAGTCGCTGTGGGCCAAACGTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTT 539
consensus_1473#1      ACAGTCGCTGTGGGCCAAACGTGAAACTGTGTTAGGAACATGGGGCTGCAATGAGGATTT 400
                      ************************************************************

consensus_1473#0      GAACACAGGACAAGATGATCCCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGA 599
consensus_1473#1      GAACACAGGACAAGATGATCCCAAACTTAATGATGATGTCATGGAATCAGTTAAATTAGA 460
                      ************************************************************

consensus_1473#0      AACCACATAAGAAGCGAAGAAGTCTTTTA------------------------------- 628
consensus_1473#1      AACCACATAAGAAGCGAAGAAGTCTTTTAATCCCTGTCCAAGAGCAGAGGAGTCACAAAT 520
                      *****************************                               

consensus_1473#0      -----------
consensus_1473#1      AGCATTGGGAC 531