cluster # 1480

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Schistosoma mansoni
cluster # 1480 cluster # 1480 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1480#0 length = 981 sequences # 1

consensus_1480#1 length = 665 sequences # 1

consensusID : consensus_1480#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 981
fasta sequence

                              [ACAGGCCAGAATTTTGCACGAGGTTTCATACCGTTGGAACAGCCACCTAAAGCTTCCTTATCAAGATATAGATCATGTAGCCAGAGAGAAGTAATATCCTTATTCAACATTAAAAAGTTTCCTTGTAAAACTATGGGAGTACCAAAAGTTAATCCACCAAATCCTCAATGCTATCTTAAGATGAGACACTCAGCACCTGAATTATTTAGAAAGAAGGATGAGCCGTTGAAAGACAGCTATTATAAATGTAGCCTTTCAGCTAAAAAAGAACCTCTACCATCTCTAAAATCTAAATCACTGAACGTCGTGTCATGCAAAGATTTTATCAAAAAGAATATAAAGGTGATTGAAGCGTCAGTGCCTCCAAAGCCCAAACCTTTTATGGTAGATACGAGGACAGGTCATAAGTTTGATATCAAGTTTTCTGGTCTTGAGCCTATTTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATACCTCTCTGAGCGTGAGAAAGCCGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAGCAACTTAAGGAAAAGAATGCTTTGACGGTTATCACAAAAGATGAGAAAAAGTCTTTAATCGACCAACTGAAAGACAAATGGCAGCAAAGATATAGACAATATCAGTCTTTATCCGTTATGATCGATACGCCTNCAAAAATGCATCACANATTATGGCTTGAAAAAGAAATGGAAGACATAGAANAAAGACATCACCTCTTGGAAGGATACGACTATATATACGTTGCCAAATAATGCCGTACCANACATTATATTAAAATGTCACANTAAAGTGTGACAATACTCCACTGTCTGTGTACTGATNNTCCAACTACTATTTGAGGAACACACATTTTCTCATTGACTTGCACACTATCTCAATTGATCAAATACTGGATTNCGAAGTGCATTAGNTCACTGACTCGATTCGTCTTGTTGCATTCCTACTTGTGGTTGGGTTAA]

[+] EMBL CD080835             [ACAGGCCAGAATTTTGCACGAGGTTTCATACCGTTGGAACAGCCACCTAAAGCTTCCTTATCAAGATATAGATCATGTAGCCAGAGAGAAGTAATATCCTTATTCAACATTAAAAAGTTTCCTTGTAAAACTATGGGAGTACCAAAAGTTAATCCACCAAATCCTCAATGCTATCTTAAGATGAGACACTCAGCACCTGAATTATTTAGAAAGAAGGATGAGCCGTTGAAAGACAGCTATTATAAATGTAGCCTTTCAGCTAAAAAAGAACCTCTACCATCTCTAAAATCTAAATCACTGAACGTCGTGTCATGCAAAGATTTTATCAAAAAGAATATAAAGGTGATTGAAGCGTCAGTGCCTCCAAAGCCCAAACCTTTTATGGTAGATACGAGGACAGGTCATAAGTTTGATATCAAGTTTTCTGGTCTTGAGCCTATTTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATACCTCTCTGAGCGTGAGAAAGCCGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAGCAACTTAAGGAAAAGAATGCTTTGACGGTTATCACAAAAGATGAGAAAAAGTCTTTAATCGACCAACTGAAAGACAAATGGCAGCAAAGATATAGACAATATCAGTCTTTATCCGTTATGATCGATACGCCTNCAAAAATGCATCACANATTATGGCTTGAAAAAGAAATGGAAGACATAGAANAAAGACATCACCTCTTGGAAGGATACGACTATATATACGTTGCCAAATAATGCCGTACCANACATTATATTAAAATGTCACANTAAAGTGTGACAATACTCCACTGTCTGTGTACTGATNNTCCAACTACTATTTGAGGAACACACATTTTCTCATTGACTTGCACACTATCTCAATTGATCAAATACTGGATTNCGAAGTGCATTAGNTCACTGACTCGATTCGTCTTGTTGCATTCCTACTTGTGGTTGGGTTAA]




>consensus_1480#0
ACAGGCCAGAATTTTGCACGAGGTTTCATACCGTTGGAACAGCCACCTAAAGCTTCCTTA
TCAAGATATAGATCATGTAGCCAGAGAGAAGTAATATCCTTATTCAACATTAAAAAGTTT
CCTTGTAAAACTATGGGAGTACCAAAAGTTAATCCACCAAATCCTCAATGCTATCTTAAG
ATGAGACACTCAGCACCTGAATTATTTAGAAAGAAGGATGAGCCGTTGAAAGACAGCTAT
TATAAATGTAGCCTTTCAGCTAAAAAAGAACCTCTACCATCTCTAAAATCTAAATCACTG
AACGTCGTGTCATGCAAAGATTTTATCAAAAAGAATATAAAGGTGATTGAAGCGTCAGTG
CCTCCAAAGCCCAAACCTTTTATGGTAGATACGAGGACAGGTCATAAGTTTGATATCAAG
TTTTCTGGTCTTGAGCCTATTTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATAC
CTCTCTGAGCGTGAGAAAGCCGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAG
CAACTTAAGGAAAAGAATGCTTTGACGGTTATCACAAAAGATGAGAAAAAGTCTTTAATC
GACCAACTGAAAGACAAATGGCAGCAAAGATATAGACAATATCAGTCTTTATCCGTTATG
ATCGATACGCCTNCAAAAATGCATCACANATTATGGCTTGAAAAAGAAATGGAAGACATA
GAANAAAGACATCACCTCTTGGAAGGATACGACTATATATACGTTGCCAAATAATGCCGT
ACCANACATTATATTAAAATGTCACANTAAAGTGTGACAATACTCCACTGTCTGTGTACT
GATNNTCCAACTACTATTTGAGGAACACACATTTTCTCATTGACTTGCACACTATCTCAA
TTGATCAAATACTGGATTNCGAAGTGCATTAGNTCACTGACTCGATTCGTCTTGTTGCAT
TCCTACTTGTGGTTGGGTTAA

consensusID : consensus_1480#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [TTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATACCTCTCTGAGCGTGAGAAAGCCGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAGCAACTTAAGGAAAAGAATGCTTTGACGGTTATCACAAAAGATGAGAAAAAGGTTAGATTATTTATCGGTTTTCGTGACTTTCTATCAACTTAGTCTTTAATCGACCAACTGAAAGACAAATGGCAGCAAAGATATAGACAATATCAGTCTTTATCCGTTATGATCGATACGCCTCCAAAAATGCATCACAAATTATGGCTTGAAAAAGAAATGGAAGACATAGAAAAAGACATCAACCTCTTGGAAGGATACGACTATATATACGTTGCCAAATAAATGCCGTACCAAACATTTATAATTAAAAATGTCCACATAAAAGTGCTGCACAAATACTCACACTGTGTGGTGTACTGATTTTTCCACACTTACTATTTTGAGGAAACCACACAATTTTTTCTCCATTTGAACTCTGCAACAACTTATCCTCAAATATGTATCAGAAATACTGTGATTTCCAGAAAGGTGCATTTACAGTTTTTACTTGCACCTACAGATTTCGCTCTTTTTGTTTTGCAATATTTTTCCTCACTCTCTGTAGGTATGTGATTTAGAATGGGGATACTAC]

[-] EMBL CD077090             [TTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATACCTCTCTGAGCGTGAGAAAGCCGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAGCAACTTAAGGAAAAGAATGCTTTGACGGTTATCACAAAAGATGAGAAAAAGGTTAGATTATTTATCGGTTTTCGTGACTTTCTATCAACTTAGTCTTTAATCGACCAACTGAAAGACAAATGGCAGCAAAGATATAGACAATATCAGTCTTTATCCGTTATGATCGATACGCCTCCAAAAATGCATCACAAATTATGGCTTGAAAAAGAAATGGAAGACATAGAAAAAGACATCAACCTCTTGGAAGGATACGACTATATATACGTTGCCAAATAAATGCCGTACCAAACATTTATAATTAAAAATGTCCACATAAAAGTGCTGCACAAATACTCACACTGTGTGGTGTACTGATTTTTCCACACTTACTATTTTGAGGAAACCACACAATTTTTTCTCCATTTGAACTCTGCAACAACTTATCCTCAAATATGTATCAGAAATACTGTGATTTCCAGAAAGGTGCATTTACAGTTTTTACTTGCACCTACAGATTTCGCTCTTTTTGTTTTGCAATATTTTTCCTCACTCTCTGTAGGTATGTGATTTAGAATGGGGATACTAC]




>consensus_1480#1
TTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATACCTCTCTGAGCGTGAGAAAGC
CGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAGCAACTTAAGGAAAAGAATGC
TTTGACGGTTATCACAAAAGATGAGAAAAAGGTTAGATTATTTATCGGTTTTCGTGACTT
TCTATCAACTTAGTCTTTAATCGACCAACTGAAAGACAAATGGCAGCAAAGATATAGACA
ATATCAGTCTTTATCCGTTATGATCGATACGCCTCCAAAAATGCATCACAAATTATGGCT
TGAAAAAGAAATGGAAGACATAGAAAAAGACATCAACCTCTTGGAAGGATACGACTATAT
ATACGTTGCCAAATAAATGCCGTACCAAACATTTATAATTAAAAATGTCCACATAAAAGT
GCTGCACAAATACTCACACTGTGTGGTGTACTGATTTTTCCACACTTACTATTTTGAGGA
AACCACACAATTTTTTCTCCATTTGAACTCTGCAACAACTTATCCTCAAATATGTATCAG
AAATACTGTGATTTCCAGAAAGGTGCATTTACAGTTTTTACTTGCACCTACAGATTTCGC
TCTTTTTGTTTTGCAATATTTTTCCTCACTCTCTGTAGGTATGTGATTTAGAATGGGGAT
ACTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1480#0      ACAGGCCAGAATTTTGCACGAGGTTTCATACCGTTGGAACAGCCACCTAAAGCTTCCTTA 60
consensus_1480#1      ------------------------------------------------------------
                                                                                  

consensus_1480#0      TCAAGATATAGATCATGTAGCCAGAGAGAAGTAATATCCTTATTCAACATTAAAAAGTTT 120
consensus_1480#1      ------------------------------------------------------------
                                                                                  

consensus_1480#0      CCTTGTAAAACTATGGGAGTACCAAAAGTTAATCCACCAAATCCTCAATGCTATCTTAAG 180
consensus_1480#1      ------------------------------------------------------------
                                                                                  

consensus_1480#0      ATGAGACACTCAGCACCTGAATTATTTAGAAAGAAGGATGAGCCGTTGAAAGACAGCTAT 240
consensus_1480#1      ------------------------------------------------------------
                                                                                  

consensus_1480#0      TATAAATGTAGCCTTTCAGCTAAAAAAGAACCTCTACCATCTCTAAAATCTAAATCACTG 300
consensus_1480#1      ------------------------------------------------------------
                                                                                  

consensus_1480#0      AACGTCGTGTCATGCAAAGATTTTATCAAAAAGAATATAAAGGTGATTGAAGCGTCAGTG 360
consensus_1480#1      ------------------------------------------------------------
                                                                                  

consensus_1480#0      CCTCCAAAGCCCAAACCTTTTATGGTAGATACGAGGACAGGTCATAAGTTTGATATCAAG 420
consensus_1480#1      ------------------------------------------------------------
                                                                                  

consensus_1480#0      TTTTCTGGTCTTGAGCCTATTTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATAC 480
consensus_1480#1      --------------------TTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATAC 40
                                          ****************************************

consensus_1480#0      CTCTCTGAGCGTGAGAAAGCCGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAG 540
consensus_1480#1      CTCTCTGAGCGTGAGAAAGCCGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAG 100
                      ************************************************************

consensus_1480#0      CAACTTAAGGAAAAGAATGCTTTGACGGTTATCACAAAAGATGAGAAAAAG--------- 591
consensus_1480#1      CAACTTAAGGAAAAGAATGCTTTGACGGTTATCACAAAAGATGAGAAAAAGGTTAGATTA 160
                      ***************************************************         

consensus_1480#0      ---------------------------------TCTTTAATCGACCAACTGAAAGACAAA 618
consensus_1480#1      TTTATCGGTTTTCGTGACTTTCTATCAACTTAGTCTTTAATCGACCAACTGAAAGACAAA 220
                                                       ***************************

consensus_1480#0      TGGCAGCAAAGATATAGACAATATCAGTCTTTATCCGTTATGATCGATACGCCTNCAAAA 678
consensus_1480#1      TGGCAGCAAAGATATAGACAATATCAGTCTTTATCCGTTATGATCGATACGCCTCCAAAA 280
                      ****************************************************** *****

consensus_1480#0      ATGCATCACANATTATGGCTTGAAAAAGAAATGGAAGACATAGAANAAAGACATCA-CCT 737
consensus_1480#1      ATGCATCACAAATTATGGCTTGAAAAAGAAATGGAAGACATAGAAAAA-GACATCAACCT 339
                      ********** ********************************** ** ******* ***

consensus_1480#0      CTTGGAAGGATACGACTATATATACGTTGCCAAATAA-TGCCGTACCANACATT-ATATT 795
consensus_1480#1      CTTGGAAGGATACGACTATATATACGTTGCCAAATAAATGCCGTACCAAACATTTATAAT 399
                      ************************************* ********** ***** *** *

consensus_1480#0      --AAAATGTC-ACANTAAAGTGTGACA---ATACTC-CACTGTCTG-TGTACTGATNNTC 847
consensus_1480#1      TAAAAATGTCCACATAAAAGTGCTGCACAAATACTCACACTGTGTGGTGTACTGATTTTT 459
                        ******** ***  ******   **   ****** ****** ** *********  * 

consensus_1480#0      CAAC---TACTATTT-GAGGAA--CACACATTTTCTCATTGACTTGCACACTATCTCAAT 901
consensus_1480#1      CCACACTTACTATTTTGAGGAAACCACACAATTTTTTCTCCATTTGAACTCTGCAACAAC 519
                      * **   ******** ******  ****** *** *  *  * *** ** **    *** 

consensus_1480#0      TGATC----------------AAATACTG-GATTNCGAAGTGCATTAGNTCACTGACTCG 944
consensus_1480#1      TTATCCTCAAATATGTATCAGAAATACTGTGATTTCCAGAAAGGTGCATTTACAGTTTTT 579
                      * ***                ******** **** * *      *    * ** *  *  

consensus_1480#0      ATTCGT-CTTGTTGCATTCCTACTTGTGGTTGGGTTAA---------------------- 981
consensus_1480#1      ACTTGCACCTACAGATTTCGCTCTTTTTGTTTTGCAATATTTTTCCTCACTCTCTGTAGG 639
                      * * *  * *   *  ***   *** * ***  *  *                       

consensus_1480#0      --------------------------
consensus_1480#1      TATGTGATTTAGAATGGGGATACTAC 665