These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 981 fasta sequence [ACAGGCCAGAATTTTGCACGAGGTTTCATACCGTTGGAACAGCCACCTAAAGCTTCCTTATCAAGATATAGATCATGTAGCCAGAGAGAAGTAATATCCTTATTCAACATTAAAAAGTTTCCTTGTAAAACTATGGGAGTACCAAAAGTTAATCCACCAAATCCTCAATGCTATCTTAAGATGAGACACTCAGCACCTGAATTATTTAGAAAGAAGGATGAGCCGTTGAAAGACAGCTATTATAAATGTAGCCTTTCAGCTAAAAAAGAACCTCTACCATCTCTAAAATCTAAATCACTGAACGTCGTGTCATGCAAAGATTTTATCAAAAAGAATATAAAGGTGATTGAAGCGTCAGTGCCTCCAAAGCCCAAACCTTTTATGGTAGATACGAGGACAGGTCATAAGTTTGATATCAAGTTTTCTGGTCTTGAGCCTATTTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATACCTCTCTGAGCGTGAGAAAGCCGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAGCAACTTAAGGAAAAGAATGCTTTGACGGTTATCACAAAAGATGAGAAAAAGTCTTTAATCGACCAACTGAAAGACAAATGGCAGCAAAGATATAGACAATATCAGTCTTTATCCGTTATGATCGATACGCCTNCAAAAATGCATCACANATTATGGCTTGAAAAAGAAATGGAAGACATAGAANAAAGACATCACCTCTTGGAAGGATACGACTATATATACGTTGCCAAATAATGCCGTACCANACATTATATTAAAATGTCACANTAAAGTGTGACAATACTCCACTGTCTGTGTACTGATNNTCCAACTACTATTTGAGGAACACACATTTTCTCATTGACTTGCACACTATCTCAATTGATCAAATACTGGATTNCGAAGTGCATTAGNTCACTGACTCGATTCGTCTTGTTGCATTCCTACTTGTGGTTGGGTTAA] [+] EMBL CD080835 [ACAGGCCAGAATTTTGCACGAGGTTTCATACCGTTGGAACAGCCACCTAAAGCTTCCTTATCAAGATATAGATCATGTAGCCAGAGAGAAGTAATATCCTTATTCAACATTAAAAAGTTTCCTTGTAAAACTATGGGAGTACCAAAAGTTAATCCACCAAATCCTCAATGCTATCTTAAGATGAGACACTCAGCACCTGAATTATTTAGAAAGAAGGATGAGCCGTTGAAAGACAGCTATTATAAATGTAGCCTTTCAGCTAAAAAAGAACCTCTACCATCTCTAAAATCTAAATCACTGAACGTCGTGTCATGCAAAGATTTTATCAAAAAGAATATAAAGGTGATTGAAGCGTCAGTGCCTCCAAAGCCCAAACCTTTTATGGTAGATACGAGGACAGGTCATAAGTTTGATATCAAGTTTTCTGGTCTTGAGCCTATTTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATACCTCTCTGAGCGTGAGAAAGCCGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAGCAACTTAAGGAAAAGAATGCTTTGACGGTTATCACAAAAGATGAGAAAAAGTCTTTAATCGACCAACTGAAAGACAAATGGCAGCAAAGATATAGACAATATCAGTCTTTATCCGTTATGATCGATACGCCTNCAAAAATGCATCACANATTATGGCTTGAAAAAGAAATGGAAGACATAGAANAAAGACATCACCTCTTGGAAGGATACGACTATATATACGTTGCCAAATAATGCCGTACCANACATTATATTAAAATGTCACANTAAAGTGTGACAATACTCCACTGTCTGTGTACTGATNNTCCAACTACTATTTGAGGAACACACATTTTCTCATTGACTTGCACACTATCTCAATTGATCAAATACTGGATTNCGAAGTGCATTAGNTCACTGACTCGATTCGTCTTGTTGCATTCCTACTTGTGGTTGGGTTAA] consensusID : consensus_1480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [TTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATACCTCTCTGAGCGTGAGAAAGCCGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAGCAACTTAAGGAAAAGAATGCTTTGACGGTTATCACAAAAGATGAGAAAAAGGTTAGATTATTTATCGGTTTTCGTGACTTTCTATCAACTTAGTCTTTAATCGACCAACTGAAAGACAAATGGCAGCAAAGATATAGACAATATCAGTCTTTATCCGTTATGATCGATACGCCTCCAAAAATGCATCACAAATTATGGCTTGAAAAAGAAATGGAAGACATAGAAAAAGACATCAACCTCTTGGAAGGATACGACTATATATACGTTGCCAAATAAATGCCGTACCAAACATTTATAATTAAAAATGTCCACATAAAAGTGCTGCACAAATACTCACACTGTGTGGTGTACTGATTTTTCCACACTTACTATTTTGAGGAAACCACACAATTTTTTCTCCATTTGAACTCTGCAACAACTTATCCTCAAATATGTATCAGAAATACTGTGATTTCCAGAAAGGTGCATTTACAGTTTTTACTTGCACCTACAGATTTCGCTCTTTTTGTTTTGCAATATTTTTCCTCACTCTCTGTAGGTATGTGATTTAGAATGGGGATACTAC] [-] EMBL CD077090 [TTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATACCTCTCTGAGCGTGAGAAAGCCGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAGCAACTTAAGGAAAAGAATGCTTTGACGGTTATCACAAAAGATGAGAAAAAGGTTAGATTATTTATCGGTTTTCGTGACTTTCTATCAACTTAGTCTTTAATCGACCAACTGAAAGACAAATGGCAGCAAAGATATAGACAATATCAGTCTTTATCCGTTATGATCGATACGCCTCCAAAAATGCATCACAAATTATGGCTTGAAAAAGAAATGGAAGACATAGAAAAAGACATCAACCTCTTGGAAGGATACGACTATATATACGTTGCCAAATAAATGCCGTACCAAACATTTATAATTAAAAATGTCCACATAAAAGTGCTGCACAAATACTCACACTGTGTGGTGTACTGATTTTTCCACACTTACTATTTTGAGGAAACCACACAATTTTTTCTCCATTTGAACTCTGCAACAACTTATCCTCAAATATGTATCAGAAATACTGTGATTTCCAGAAAGGTGCATTTACAGTTTTTACTTGCACCTACAGATTTCGCTCTTTTTGTTTTGCAATATTTTTCCTCACTCTCTGTAGGTATGTGATTTAGAATGGGGATACTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1480#0 ACAGGCCAGAATTTTGCACGAGGTTTCATACCGTTGGAACAGCCACCTAAAGCTTCCTTA 60 consensus_1480#1 ------------------------------------------------------------ consensus_1480#0 TCAAGATATAGATCATGTAGCCAGAGAGAAGTAATATCCTTATTCAACATTAAAAAGTTT 120 consensus_1480#1 ------------------------------------------------------------ consensus_1480#0 CCTTGTAAAACTATGGGAGTACCAAAAGTTAATCCACCAAATCCTCAATGCTATCTTAAG 180 consensus_1480#1 ------------------------------------------------------------ consensus_1480#0 ATGAGACACTCAGCACCTGAATTATTTAGAAAGAAGGATGAGCCGTTGAAAGACAGCTAT 240 consensus_1480#1 ------------------------------------------------------------ consensus_1480#0 TATAAATGTAGCCTTTCAGCTAAAAAAGAACCTCTACCATCTCTAAAATCTAAATCACTG 300 consensus_1480#1 ------------------------------------------------------------ consensus_1480#0 AACGTCGTGTCATGCAAAGATTTTATCAAAAAGAATATAAAGGTGATTGAAGCGTCAGTG 360 consensus_1480#1 ------------------------------------------------------------ consensus_1480#0 CCTCCAAAGCCCAAACCTTTTATGGTAGATACGAGGACAGGTCATAAGTTTGATATCAAG 420 consensus_1480#1 ------------------------------------------------------------ consensus_1480#0 TTTTCTGGTCTTGAGCCTATTTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATAC 480 consensus_1480#1 --------------------TTATATTAGGCGTAAGGACTTTGGGGAATTGCCGAAATAC 40 **************************************** consensus_1480#0 CTCTCTGAGCGTGAGAAAGCCGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAG 540 consensus_1480#1 CTCTCTGAGCGTGAGAAAGCCGCTGCTGAAGCCCAAAAGAACTATGAAGAGTACATTAAG 100 ************************************************************ consensus_1480#0 CAACTTAAGGAAAAGAATGCTTTGACGGTTATCACAAAAGATGAGAAAAAG--------- 591 consensus_1480#1 CAACTTAAGGAAAAGAATGCTTTGACGGTTATCACAAAAGATGAGAAAAAGGTTAGATTA 160 *************************************************** consensus_1480#0 ---------------------------------TCTTTAATCGACCAACTGAAAGACAAA 618 consensus_1480#1 TTTATCGGTTTTCGTGACTTTCTATCAACTTAGTCTTTAATCGACCAACTGAAAGACAAA 220 *************************** consensus_1480#0 TGGCAGCAAAGATATAGACAATATCAGTCTTTATCCGTTATGATCGATACGCCTNCAAAA 678 consensus_1480#1 TGGCAGCAAAGATATAGACAATATCAGTCTTTATCCGTTATGATCGATACGCCTCCAAAA 280 ****************************************************** ***** consensus_1480#0 ATGCATCACANATTATGGCTTGAAAAAGAAATGGAAGACATAGAANAAAGACATCA-CCT 737 consensus_1480#1 ATGCATCACAAATTATGGCTTGAAAAAGAAATGGAAGACATAGAAAAA-GACATCAACCT 339 ********** ********************************** ** ******* *** consensus_1480#0 CTTGGAAGGATACGACTATATATACGTTGCCAAATAA-TGCCGTACCANACATT-ATATT 795 consensus_1480#1 CTTGGAAGGATACGACTATATATACGTTGCCAAATAAATGCCGTACCAAACATTTATAAT 399 ************************************* ********** ***** *** * consensus_1480#0 --AAAATGTC-ACANTAAAGTGTGACA---ATACTC-CACTGTCTG-TGTACTGATNNTC 847 consensus_1480#1 TAAAAATGTCCACATAAAAGTGCTGCACAAATACTCACACTGTGTGGTGTACTGATTTTT 459 ******** *** ****** ** ****** ****** ** ********* * consensus_1480#0 CAAC---TACTATTT-GAGGAA--CACACATTTTCTCATTGACTTGCACACTATCTCAAT 901 consensus_1480#1 CCACACTTACTATTTTGAGGAAACCACACAATTTTTTCTCCATTTGAACTCTGCAACAAC 519 * ** ******** ****** ****** *** * * * *** ** ** *** consensus_1480#0 TGATC----------------AAATACTG-GATTNCGAAGTGCATTAGNTCACTGACTCG 944 consensus_1480#1 TTATCCTCAAATATGTATCAGAAATACTGTGATTTCCAGAAAGGTGCATTTACAGTTTTT 579 * *** ******** **** * * * * ** * * consensus_1480#0 ATTCGT-CTTGTTGCATTCCTACTTGTGGTTGGGTTAA---------------------- 981 consensus_1480#1 ACTTGCACCTACAGATTTCGCTCTTTTTGTTTTGCAATATTTTTCCTCACTCTCTGTAGG 639 * * * * * * *** *** * *** * * consensus_1480#0 -------------------------- consensus_1480#1 TATGTGATTTAGAATGGGGATACTAC 665 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||