cluster # 1482

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Schistosoma mansoni
cluster # 1482 cluster # 1482 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1482#0 length = 684 sequences # 1

consensus_1482#1 length = 308 sequences # 1

consensusID : consensus_1482#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [TTGAAATCATTATTGTAGATACTAGTGGTCGACACAGACAAGAAGATTCATTATTTGAGGAAATGCTTCAAGTTTCAAATGCTATTGAACCAGATCATGTTATCTACGTCTTAGATGCTTCTATAGGTCAAGCTTGTGAAGCTCAAGCTAGTGCATTCAAAGCAAAAGTTGATGTATCATCAGTTATTGTGACAAAACTTGATGGTCATGCAAAAGGTGGTGGCGCTTTAAGCGCAGTTGCAGCTACACATAGTCCAATTACATTTATTGGAACTGGTGAACATGTAGAAGATTTTGAACAATTTCGAGTTCAACCATTTGTACAAAAATTATTAGGTTTAGGTGATTTAGAAGGTTTAGTGGAACGTGTTACAGAATTAAAATTAGATGAGAATGAAGAGTTAGTGAAAAAACTAAAACAAGGTGTATTCACATTACGTAATATGTATGAACAATTTCAAAATATTTTAAAAATTGGTTCATTTTCACAAGTTCTATCAGCTATACCAGGTCTTGGACAAGATTTACTTGCTAATGATCAAGAAAGTCATCGACGTTTAAAACGTCTTATGACAATTATGGATAGTATGAATGATTATGAGTTGGACTCGGATGAAGGAGGACGTCTATTTAACCGACAACCTGGACGAACATTACGAGTTGCTCGTGGAGCAGGTGTTAGTC]

[+] EMBL BF936572             [TTGAAATCATTATTGTAGATACTAGTGGTCGACACAGACAAGAAGATTCATTATTTGAGGAAATGCTTCAAGTTTCAAATGCTATTGAACCAGATCATGTTATCTACGTCTTAGATGCTTCTATAGGTCAAGCTTGTGAAGCTCAAGCTAGTGCATTCAAAGCAAAAGTTGATGTATCATCAGTTATTGTGACAAAACTTGATGGTCATGCAAAAGGTGGTGGCGCTTTAAGCGCAGTTGCAGCTACACATAGTCCAATTACATTTATTGGAACTGGTGAACATGTAGAAGATTTTGAACAATTTCGAGTTCAACCATTTGTACAAAAATTATTAGGTTTAGGTGATTTAGAAGGTTTAGTGGAACGTGTTACAGAATTAAAATTAGATGAGAATGAAGAGTTAGTGAAAAAACTAAAACAAGGTGTATTCACATTACGTAATATGTATGAACAATTTCAAAATATTTTAAAAATTGGTTCATTTTCACAAGTTCTATCAGCTATACCAGGTCTTGGACAAGATTTACTTGCTAATGATCAAGAAAGTCATCGACGTTTAAAACGTCTTATGACAATTATGGATAGTATGAATGATTATGAGTTGGACTCGGATGAAGGAGGACGTCTATTTAACCGACAACCTGGACGAACATTACGAGTTGCTCGTGGAGCAGGTGTTAGTC]




>consensus_1482#0
TTGAAATCATTATTGTAGATACTAGTGGTCGACACAGACAAGAAGATTCATTATTTGAGG
AAATGCTTCAAGTTTCAAATGCTATTGAACCAGATCATGTTATCTACGTCTTAGATGCTT
CTATAGGTCAAGCTTGTGAAGCTCAAGCTAGTGCATTCAAAGCAAAAGTTGATGTATCAT
CAGTTATTGTGACAAAACTTGATGGTCATGCAAAAGGTGGTGGCGCTTTAAGCGCAGTTG
CAGCTACACATAGTCCAATTACATTTATTGGAACTGGTGAACATGTAGAAGATTTTGAAC
AATTTCGAGTTCAACCATTTGTACAAAAATTATTAGGTTTAGGTGATTTAGAAGGTTTAG
TGGAACGTGTTACAGAATTAAAATTAGATGAGAATGAAGAGTTAGTGAAAAAACTAAAAC
AAGGTGTATTCACATTACGTAATATGTATGAACAATTTCAAAATATTTTAAAAATTGGTT
CATTTTCACAAGTTCTATCAGCTATACCAGGTCTTGGACAAGATTTACTTGCTAATGATC
AAGAAAGTCATCGACGTTTAAAACGTCTTATGACAATTATGGATAGTATGAATGATTATG
AGTTGGACTCGGATGAAGGAGGACGTCTATTTAACCGACAACCTGGACGAACATTACGAG
TTGCTCGTGGAGCAGGTGTTAGTC

consensusID : consensus_1482#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence

                              [GACGAACATTACGAGTTGCTCGTGGAGCAGGTGTTAGTCAAGCTGAAGTAAAACTTCTATTAACTCAACATAATAAATCTTATATGGTTGTCAAAAAAATGGGTGGTATCAAAGGTCTATTTCAAACTGGATCTAAAAGTGGAGCTATGGGTGGAATTGGTGGTGGTCCTGGTGGAGTTGGAAGTGGGGGCGGAGCAGGAGGTAGTGGGAATACACCAAGCCTAGCTGAAATGGCTGCAGCTTCACGATCTGTCAGTGCAGGTCAAATGGCAAAATTAAATCAATCAATGGCAAAAGTACTTGATCCA]

[+] EMBL CD131405             [GACGAACATTACGAGTTGCTCGTGGAGCAGGTGTTAGTCAAGCTGAAGTAAAACTTCTATTAACTCAACATAATAAATCTTATATGGTTGTCAAAAAAATGGGTGGTATCAAAGGTCTATTTCAAACTGGATCTAAAAGTGGAGCTATGGGTGGAATTGGTGGTGGTCCTGGTGGAGTTGGAAGTGGGGGCGGAGCAGGAGGTAGTGGGAATACACCAAGCCTAGCTGAAATGGCTGCAGCTTCACGATCTGTCAGTGCAGGTCAAATGGCAAAATTAAATCAATCAATGGCAAAAGTACTTGATCCA]




>consensus_1482#1
GACGAACATTACGAGTTGCTCGTGGAGCAGGTGTTAGTCAAGCTGAAGTAAAACTTCTAT
TAACTCAACATAATAAATCTTATATGGTTGTCAAAAAAATGGGTGGTATCAAAGGTCTAT
TTCAAACTGGATCTAAAAGTGGAGCTATGGGTGGAATTGGTGGTGGTCCTGGTGGAGTTG
GAAGTGGGGGCGGAGCAGGAGGTAGTGGGAATACACCAAGCCTAGCTGAAATGGCTGCAG
CTTCACGATCTGTCAGTGCAGGTCAAATGGCAAAATTAAATCAATCAATGGCAAAAGTAC
TTGATCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1482#0      TTGAAATCATTATTGTAGATACTAGTGGTCGACACAGACAAGAAGATTCATTATTTGAGG 60
consensus_1482#1      ------------------------------------------------------------
                                                                                  

consensus_1482#0      AAATGCTTCAAGTTTCAAATGCTATTGAACCAGATCATGTTATCTACGTCTTAGATGCTT 120
consensus_1482#1      -----------------------------------------------------GACGAAC 7
                                                                           ** *   

consensus_1482#0      -CTATAGGTCAAGCTTGTGAAGCTCAAGCTAGTGCATTCAAAGCAAAAGTTGATGTATCA 179
consensus_1482#1      ATTACGAGTT--GCTCGTGGAGCAGGTGTTAGTCAAGCTGAAGTAAAACTTC---TATTA 62
                        **   **   *** *** ***    * ****  *    *** **** **    *** *

consensus_1482#0      TCAGTTATTGTGACAAAACTTG-ATGGTCATGCAAAAGGTGG-TGGCGCTTTAAGCGCAG 237
consensus_1482#1      AC--TCAACATAATAAATCTTATATGGTTGTCAAAAAAATGGGTGGTATCAAAGGTCTAT 120
                       *  * *   * * *** ***  *****  *  ****  *** ***      * *   * 

consensus_1482#0      TTGCAGCTACACATAGTCCAATTACATTTATTGGAACTGGTGAACATGTAGAAGATTTTG 297
consensus_1482#1      TTCAAACTGGATCTAA---AAGTGGAGCTATGGG------TGGAATTGGTGGTGGTCCTG 171
                      **  * **  *  **    ** *  *  *** **      ** *  **  *  * *  **

consensus_1482#0      AACAATTTCGAGTTCAACCATTTGTACAAAAATTATTAGGTTTAGGTGATTTAGAAGGTT 357
consensus_1482#1      GTGGAGTTGGAAGTGGG--GGCGGAGCAGGAGGTAGTGGG-------AATACACCAAGCC 222
                          * ** **  *         *  **  *  ** * **        **  *  * *  

consensus_1482#0      TAGTGGAACGTGTTACAGAATTAAAATTAGATGAGAATGAAGAGTTAGTGAAAAAACTAA 417
consensus_1482#1      TAGCTGAAATGGCTGCAGCTTCACGATC---TGTCAGTGCAGGTCAAATGGCAAAATTAA 279
                      ***  ***   * * ***  * *  **    **  * ** **    * **  **** ***

consensus_1482#0      AACAAGGTGTATTCACATTACGTAATATGTATGAACAATTTCAAAATATTTTAAAAATTG 477
consensus_1482#1      ATCAATCAATGGCAAAAGTACTTGATCCA------------------------------- 308
                      * ***    *    * * *** * **                                  

consensus_1482#0      GTTCATTTTCACAAGTTCTATCAGCTATACCAGGTCTTGGACAAGATTTACTTGCTAATG 537
consensus_1482#1      ------------------------------------------------------------
                                                                                  

consensus_1482#0      ATCAAGAAAGTCATCGACGTTTAAAACGTCTTATGACAATTATGGATAGTATGAATGATT 597
consensus_1482#1      ------------------------------------------------------------
                                                                                  

consensus_1482#0      ATGAGTTGGACTCGGATGAAGGAGGACGTCTATTTAACCGACAACCTGGACGAACATTAC 657
consensus_1482#1      ------------------------------------------------------------
                                                                                  

consensus_1482#0      GAGTTGCTCGTGGAGCAGGTGTTAGTC 684
consensus_1482#1      ---------------------------