cluster # 1496

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Schistosoma mansoni
cluster # 1496 cluster # 1496 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1496#0 length = 306 sequences # 1

consensus_1496#1 length = 298 sequences # 1

consensusID : consensus_1496#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence

                              [TATAGTATCGCCAAGCACTGTGCCGATGACCTACTGTGAAGTTCATAATAATGCCGCACAATACACATATGAGATCCCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAATTTAATAAATAATGGCTTCGACGAACTCACCCCAGATGCATCAGATTCAACAGATAATAATCTATCTCCTGCTTCTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATATATCATCTGATAATGTAGTCTATCAACCATTACAGGGTTTCAATACATACTATAATGGATCCTCCGT]

[+] EMBL BG931293             [TATAGTATCGCCAAGCACTGTGCCGATGACCTACTGTGAAGTTCATAATAATGCCGCACAATACACATATGAGATCCCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAATTTAATAAATAATGGCTTCGACGAACTCACCCCAGATGCATCAGATTCAACAGATAATAATCTATCTCCTGCTTCTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATATATCATCTGATAATGTAGTCTATCAACCATTACAGGGTTTCAATACATACTATAATGGATCCTCCGT]




>consensus_1496#0
TATAGTATCGCCAAGCACTGTGCCGATGACCTACTGTGAAGTTCATAATAATGCCGCACA
ATACACATATGAGATCCCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAA
TTTAATAAATAATGGCTTCGACGAACTCACCCCAGATGCATCAGATTCAACAGATAATAA
TCTATCTCCTGCTTCTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATAT
ATCATCTGATAATGTAGTCTATCAACCATTACAGGGTTTCAATACATACTATAATGGATC
CTCCGT

consensusID : consensus_1496#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence

                              [TATAATATCTCCATGCACTGTGGCGATGACCTACTGTGAAGTTCATAATAATGCCGCACAATACAAATATGACATTTCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAATTTAATAAATAATGGCTTCGACGAACTCACTTCAGTTTCATCACATTCAACAGATAATAATCTTTCTCCTGCTTTTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATATATCATCTGAAAATGTAGTCTATAAACCATTACACGGTTTTAGTAAATACTATAATGGA]

[+] EMBL BG931302             [TATAATATCTCCATGCACTGTGGCGATGACCTACTGTGAAGTTCATAATAATGCCGCACAATACAAATATGACATTTCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAATTTAATAAATAATGGCTTCGACGAACTCACTTCAGTTTCATCACATTCAACAGATAATAATCTTTCTCCTGCTTTTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATATATCATCTGAAAATGTAGTCTATAAACCATTACACGGTTTTAGTAAATACTATAATGGA]




>consensus_1496#1
TATAATATCTCCATGCACTGTGGCGATGACCTACTGTGAAGTTCATAATAATGCCGCACA
ATACAAATATGACATTTCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAA
TTTAATAAATAATGGCTTCGACGAACTCACTTCAGTTTCATCACATTCAACAGATAATAA
TCTTTCTCCTGCTTTTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATAT
ATCATCTGAAAATGTAGTCTATAAACCATTACACGGTTTTAGTAAATACTATAATGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1496#0      TATAGTATCGCCAAGCACTGTGCCGATGACCTACTGTGAAGTTCATAATAATGCCGCACA 60
consensus_1496#1      TATAATATCTCCATGCACTGTGGCGATGACCTACTGTGAAGTTCATAATAATGCCGCACA 60
                      **** **** *** ******** *************************************

consensus_1496#0      ATACACATATGAGATCCCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAA 120
consensus_1496#1      ATACAAATATGACATTTCATCTATAAATTCTAAAGGTCGAATACGACAACCAAAGTTCAA 120
                      ***** ****** **  *******************************************

consensus_1496#0      TTTAATAAATAATGGCTTCGACGAACTCACCCCAGATGCATCAGATTCAACAGATAATAA 180
consensus_1496#1      TTTAATAAATAATGGCTTCGACGAACTCACTTCAGTTTCATCACATTCAACAGATAATAA 180
                      ******************************  *** * ***** ****************

consensus_1496#0      TCTATCTCCTGCTTCTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATAT 240
consensus_1496#1      TCTTTCTCCTGCTTTTACAGCGAAGGTTACACCACCGATCGCAAATATACGGAATAATAT 240
                      *** ********** *********************************************

consensus_1496#0      ATCATCTGATAATGTAGTCTATCAACCATTACAGGGTTTCAATACATACTATAATGGATC 300
consensus_1496#1      ATCATCTGAAAATGTAGTCTATAAACCATTACACGGTTTTAGTAAATACTATAATGGA-- 298
                      ********* ************ ********** ***** * ** *************  

consensus_1496#0      CTCCGT 306
consensus_1496#1      ------