cluster # 1511

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Schistosoma mansoni
cluster # 1511 cluster # 1511 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1511#0 length = 470 sequences # 1

consensus_1511#1 length = 338 sequences # 1

consensusID : consensus_1511#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [TTTCGTTCAGTTGGTCTTAGAACCTTTATGGAATGCATATCAAACATTATTCTTTGAAGATAAACGTGATAAAGTGTTTGCGATGGCTCAAAAGGTTGGTGTAAATTTAGACCAACGTGTTATTCGTAATGTTGATAGTCGTGGAGTGTTACGTGCTTTCCTGAGTGCGTGGTTGTCGTTAGGTCATACACTTATGCATGCCATAACGGATATCTGTCCTAGTCCATCTTCAGCAGTGTCTGCTGACCGAGCTGTACATATGTTGTATGGAGATACAGTATTATGTGATTCAGCACTTACCAAACAAGATACTCCCATACCAATCGATCAAACTTCACGTGTACCAATTAATTCAATATATTCAACAACTGGGGCTAGCTTAGCTCTTCAATCTTGTGATTCATCATCACTGGCTCCAACTATTATTTTTGTGGCTAAAGCAATAAAATCATTATCTGTGAATGGGTTAC]

[+] EMBL CD168006             [TTTCGTTCAGTTGGTCTTAGAACCTTTATGGAATGCATATCAAACATTATTCTTTGAAGATAAACGTGATAAAGTGTTTGCGATGGCTCAAAAGGTTGGTGTAAATTTAGACCAACGTGTTATTCGTAATGTTGATAGTCGTGGAGTGTTACGTGCTTTCCTGAGTGCGTGGTTGTCGTTAGGTCATACACTTATGCATGCCATAACGGATATCTGTCCTAGTCCATCTTCAGCAGTGTCTGCTGACCGAGCTGTACATATGTTGTATGGAGATACAGTATTATGTGATTCAGCACTTACCAAACAAGATACTCCCATACCAATCGATCAAACTTCACGTGTACCAATTAATTCAATATATTCAACAACTGGGGCTAGCTTAGCTCTTCAATCTTGTGATTCATCATCACTGGCTCCAACTATTATTTTTGTGGCTAAAGCAATAAAATCATTATCTGTGAATGGGTTAC]




>consensus_1511#0
TTTCGTTCAGTTGGTCTTAGAACCTTTATGGAATGCATATCAAACATTATTCTTTGAAGA
TAAACGTGATAAAGTGTTTGCGATGGCTCAAAAGGTTGGTGTAAATTTAGACCAACGTGT
TATTCGTAATGTTGATAGTCGTGGAGTGTTACGTGCTTTCCTGAGTGCGTGGTTGTCGTT
AGGTCATACACTTATGCATGCCATAACGGATATCTGTCCTAGTCCATCTTCAGCAGTGTC
TGCTGACCGAGCTGTACATATGTTGTATGGAGATACAGTATTATGTGATTCAGCACTTAC
CAAACAAGATACTCCCATACCAATCGATCAAACTTCACGTGTACCAATTAATTCAATATA
TTCAACAACTGGGGCTAGCTTAGCTCTTCAATCTTGTGATTCATCATCACTGGCTCCAAC
TATTATTTTTGTGGCTAAAGCAATAAAATCATTATCTGTGAATGGGTTAC

consensusID : consensus_1511#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [CAATATATTCAACAACTGGGGCTAGCTTAGCTCTTCAATCTTGTGATTCATCATCACTGGCTCCAACTATTATTTTTGTGGCTAAAGTATTCTGGACTGATAAATTACGTCTCACTTCAAATACCACTAGTAATCCTGCTTCTATAAATACGAAACAAGAGAATACAGATTCTGATGGGATTTCACCGTCATGTGATACAGCGAATACCGATGTAAATAATCATTCAAGTGAAATACAGTCCTCTATCCCCAAACAAATTAACCTGCGATCTCCTTTGTTACTGTGTAACCCATTCACAGATACTGATTTTATTGCTTTAGCTCGAGTATTTAGTGGT]

[+] EMBL CD162727             [CAATATATTCAACAACTGGGGCTAGCTTAGCTCTTCAATCTTGTGATTCATCATCACTGGCTCCAACTATTATTTTTGTGGCTAAAGTATTCTGGACTGATAAATTACGTCTCACTTCAAATACCACTAGTAATCCTGCTTCTATAAATACGAAACAAGAGAATACAGATTCTGATGGGATTTCACCGTCATGTGATACAGCGAATACCGATGTAAATAATCATTCAAGTGAAATACAGTCCTCTATCCCCAAACAAATTAACCTGCGATCTCCTTTGTTACTGTGTAACCCATTCACAGATACTGATTTTATTGCTTTAGCTCGAGTATTTAGTGGT]




>consensus_1511#1
CAATATATTCAACAACTGGGGCTAGCTTAGCTCTTCAATCTTGTGATTCATCATCACTGG
CTCCAACTATTATTTTTGTGGCTAAAGTATTCTGGACTGATAAATTACGTCTCACTTCAA
ATACCACTAGTAATCCTGCTTCTATAAATACGAAACAAGAGAATACAGATTCTGATGGGA
TTTCACCGTCATGTGATACAGCGAATACCGATGTAAATAATCATTCAAGTGAAATACAGT
CCTCTATCCCCAAACAAATTAACCTGCGATCTCCTTTGTTACTGTGTAACCCATTCACAG
ATACTGATTTTATTGCTTTAGCTCGAGTATTTAGTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1511#0      TTTCGTTCAGTTGGTCTTAGAACCTTTATGGAATGCATATCAAACATTATTCTTTGAAGA 60
consensus_1511#1      ------------------------------------------------------------
                                                                                  

consensus_1511#0      TAAACGTGATAAAGTGTTTGCGATGGCTCAAAAGGTTGGTGTAAATTTAGACCAACGTGT 120
consensus_1511#1      --------------------CAATATATTCAACAACTGGGGCTAGCTTAG-----CTCTT 35
                                          * **   *  **    *** *  *  ****     *   *

consensus_1511#0      TATTCGTAATGTTGATAGTCGTGGAGTGTTACGTGCTTTCCTGAGTGCGTGGTTGTCGTT 180
consensus_1511#1      CAATCTTGTGATTCATCATCACTGGCTCCAAC-TATTATTTTTGTGGCTAAAGTATTCTG 94
                       * ** *    ** **  **   *  *   ** *  * *  *    **     * *  * 

consensus_1511#0      AGGTCATACACTTATGCATGCCATAACGGATATCTGTCCTAGTCCATCTTCAGCAGTGTC 240
consensus_1511#1      GACTGATAAATT---ACGTCTCACTTCAAATACCACTAGTAATCCTGCTTCTATAAATAC 151
                         * *** * *    * *  **   *  *** *  *  ** ***  ****   *    *

consensus_1511#0      TGCTGACCGAGCTGTACATATGTTGTATGGAGATACAGTATTATGTGATTCAGCACTTAC 300
consensus_1511#1      GA--AACAAGAGAATACAGATTCTG-ATGGGATTTCACCGTCATGTGATACAGCGAATAC 208
                           **       **** **  ** ****   * **   * ******* ****   ***

consensus_1511#0      CAAACAAGATACTCCCATACCAATCGATCAAACTTCACGTGTACCAATTAATTCAATATA 360
consensus_1511#1      CGATGTAAATAATC--ATTCAAGTGAAATACAGTCCTCTATCCCCAAACAAATTAAC--- 263
                      * *   * *** **  ** * * *  *  * * * * *     ****  ** * **    

consensus_1511#0      TTCAACAACTGGGGCTAGCTTAGCTCTTCAATCTTGTGATTCATCATCACTGGCTCCAAC 420
consensus_1511#1      --------CTGCGATCTCCTTTGTT-----ACTGTGTAACCCAT--TCACAGATACTGAT 308
                              *** *     *** * *     *   *** *  ***  **** *   *  * 

consensus_1511#0      TATTATTTTTGTGGCTAAAGCAATAAAATCATTATCTGTGAATGGGTTAC 470
consensus_1511#1      T-TTATTGCTTTAGCTCGAGTATTTAG-TGGT------------------ 338
                      * *****  * * ***  ** * * *  *  *