cluster # 1520

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Schistosoma mansoni
cluster # 1520 cluster # 1520 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1520#0 length = 575 sequences # 1

consensus_1520#1 length = 257 sequences # 1

consensusID : consensus_1520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATAAGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCAACATATACAAATCCAAAACAAAAAGAAAGAGGTCATCAATTGACATTATTTTCAAAAGTGGTTCAAACAGGAGAATTAGAAAAGTAATAACAACATAAGTTTATCAAAACGGGACTTATTATAAAGAGCGAAAACGGAAAGGGATAGGGAAAACACTCATTGGCTATTCATTATATATATATATATATATATATATATATATGTCTGATTTTACTGGACAGAAATAAATAGGGAAGATTAAGAAAGGCAATAATAAATATACACAATAAATGTAGAATCGCAAATTTCAATTCATATAAAATCATCATCATTATCGTTTGCGTTTTCCATAATGACTAGTTGAAAATAATGGTTGTGATTGTTGGTGATTGACAGGACTTAAATTTTCACTGTCAATATTATTACTGTTATTTAAGGAATTAATAATAGTATTATTATTGTTACTATTGCTACTATTAATGATATTATC]

[+] EMBL CD077272             [AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATAAGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCAACATATACAAATCCAAAACAAAAAGAAAGAGGTCATCAATTGACATTATTTTCAAAAGTGGTTCAAACAGGAGAATTAGAAAAGTAATAACAACATAAGTTTATCAAAACGGGACTTATTATAAAGAGCGAAAACGGAAAGGGATAGGGAAAACACTCATTGGCTATTCATTATATATATATATATATATATATATATATATGTCTGATTTTACTGGACAGAAATAAATAGGGAAGATTAAGAAAGGCAATAATAAATATACACAATAAATGTAGAATCGCAAATTTCAATTCATATAAAATCATCATCATTATCGTTTGCGTTTTCCATAATGACTAGTTGAAAATAATGGTTGTGATTGTTGGTGATTGACAGGACTTAAATTTTCACTGTCAATATTATTACTGTTATTTAAGGAATTAATAATAGTATTATTATTGTTACTATTGCTACTATTAATGATATTATC]




>consensus_1520#0
AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATA
AGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCAACATATACAAATCC
AAAACAAAAAGAAAGAGGTCATCAATTGACATTATTTTCAAAAGTGGTTCAAACAGGAGA
ATTAGAAAAGTAATAACAACATAAGTTTATCAAAACGGGACTTATTATAAAGAGCGAAAA
CGGAAAGGGATAGGGAAAACACTCATTGGCTATTCATTATATATATATATATATATATAT
ATATATATGTCTGATTTTACTGGACAGAAATAAATAGGGAAGATTAAGAAAGGCAATAAT
AAATATACACAATAAATGTAGAATCGCAAATTTCAATTCATATAAAATCATCATCATTAT
CGTTTGCGTTTTCCATAATGACTAGTTGAAAATAATGGTTGTGATTGTTGGTGATTGACA
GGACTTAAATTTTCACTGTCAATATTATTACTGTTATTTAAGGAATTAATAATAGTATTA
TTATTGTTACTATTGCTACTATTAATGATATTATC

consensusID : consensus_1520#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 257
fasta sequence

                              [AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATAAGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCCACATATACCAATCCAAACCAAAAGGAAGAGGTCATCAATTGACATTATTTTCCAAAGTGGTTCAACAGGAGGATTAGAAAGTATTACAACCTAAGTTTTTCAAACCGGGCCTTTTTTAAGGGCCGAACCGGAAGGGGATGTGACACCCCTG]

[+] EMBL AI882655             [AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATAAGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCCACATATACCAATCCAAACCAAAAGGAAGAGGTCATCAATTGACATTATTTTCCAAAGTGGTTCAACAGGAGGATTAGAAAGTATTACAACCTAAGTTTTTCAAACCGGGCCTTTTTTAAGGGCCGAACCGGAAGGGGATGTGACACCCCTG]




>consensus_1520#1
AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATA
AGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCCACATATACCAATCC
AAACCAAAAGGAAGAGGTCATCAATTGACATTATTTTCCAAAGTGGTTCAACAGGAGGAT
TAGAAAGTATTACAACCTAAGTTTTTCAAACCGGGCCTTTTTTAAGGGCCGAACCGGAAG
GGGATGTGACACCCCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1520#0      AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATA 60
consensus_1520#1      AATAACTGATTTATTTCTATATTTTATTACAATTTCAATAATAGTATGCACATAATAATA 60
                      ************************************************************

consensus_1520#0      AGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCAACATATACAAATCC 120
consensus_1520#1      AGAAACAAAACCATACATACACGCACAAAGAGAAAACAAATGTTCCACATATACCAATCC 120
                      ********************************************* ******** *****

consensus_1520#0      AAAACAAAAAGAAAGAGGTCATCAATTGACATTATTTTCAAAAGTGGTTCAAACAGGAGA 180
consensus_1520#1      AAACCAAAAGGAA-GAGGTCATCAATTGACATTATTTTCCAAAGTGGTTCAA-CAGGAGG 178
                      *** ***** *** ************************* ************ ****** 

consensus_1520#0      ATTAGAAAAGTAATAACAACATAAGTTTATCAAAACGGGACTTATTATAAAGAGCGAAAA 240
consensus_1520#1      ATTAGAAAGT--ATTACAACCTAAGTTTTTCAAACCGGGCCT--TTTTTAAGGGCCGAAC 234
                      ********    ** ***** ******* ***** **** **  ** * *** **  ** 

consensus_1520#0      CGGAAAGGGATAGGGAAAACACTCATTGGCTATTCATTATATATATATATATATATATAT 300
consensus_1520#1      CGGAAGGGGAT-GTGACACCCCTG------------------------------------ 257
                      ***** ***** * ** * * **                                     

consensus_1520#0      ATATATATGTCTGATTTTACTGGACAGAAATAAATAGGGAAGATTAAGAAAGGCAATAAT 360
consensus_1520#1      ------------------------------------------------------------
                                                                                  

consensus_1520#0      AAATATACACAATAAATGTAGAATCGCAAATTTCAATTCATATAAAATCATCATCATTAT 420
consensus_1520#1      ------------------------------------------------------------
                                                                                  

consensus_1520#0      CGTTTGCGTTTTCCATAATGACTAGTTGAAAATAATGGTTGTGATTGTTGGTGATTGACA 480
consensus_1520#1      ------------------------------------------------------------
                                                                                  

consensus_1520#0      GGACTTAAATTTTCACTGTCAATATTATTACTGTTATTTAAGGAATTAATAATAGTATTA 540
consensus_1520#1      ------------------------------------------------------------
                                                                                  

consensus_1520#0      TTATTGTTACTATTGCTACTATTAATGATATTATC 575
consensus_1520#1      -----------------------------------