cluster # 1531

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Schistosoma mansoni
cluster # 1531 cluster # 1531 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1531#0 length = 610 sequences # 1

consensus_1531#1 length = 276 sequences # 1

consensusID : consensus_1531#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [ATTTATAGCAAAGCAGATACTAGTGATAACGTCAAATTGTTTATACGTTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGTAACAAATAAAAGACCGGGTATGTAATCAACTTTACGTGAGCACAACAAAAGGATGTAAAATTGATAATTAACCACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATACAAGACTGAAGTGCTTATAATTACTAGAGGAAAGCATCACAGATTGTTGTGTAAACAGTGTAAATAAACACACAAAAATGGTCACTAAAATTATGGCCTGAAAAAAAAAACAGAAATTAAAAGTTTTAGCGAAGCAAACTCAAATTCGTCAATAGAAATTTCAAGTCAAACTGTAGTTTAGTAGTAATTCATTAAATGAAAATAGATAAGCTGTACACATATATAAATATATCATTTTTATGGGTACGAAAATACATTCAGACAAAGTTTGCCGAAGTAAATCGTGAAGAGAAATAAAACTTCGAAAACAATTAAAGATCATTTGAGAATAGCTATTATATATAATATATATATATATATATNATAAGTGGTGTATGAAAAGTTT]

[+] EMBL CD077332             [ATTTATAGCAAAGCAGATACTAGTGATAACGTCAAATTGTTTATACGTTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGTAACAAATAAAAGACCGGGTATGTAATCAACTTTACGTGAGCACAACAAAAGGATGTAAAATTGATAATTAACCACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATACAAGACTGAAGTGCTTATAATTACTAGAGGAAAGCATCACAGATTGTTGTGTAAACAGTGTAAATAAACACACAAAAATGGTCACTAAAATTATGGCCTGAAAAAAAAAACAGAAATTAAAAGTTTTAGCGAAGCAAACTCAAATTCGTCAATAGAAATTTCAAGTCAAACTGTAGTTTAGTAGTAATTCATTAAATGAAAATAGATAAGCTGTACACATATATAAATATATCATTTTTATGGGTACGAAAATACATTCAGACAAAGTTTGCCGAAGTAAATCGTGAAGAGAAATAAAACTTCGAAAACAATTAAAGATCATTTGAGAATAGCTATTATATATAATATATATATATATATATNATAAGTGGTGTATGAAAAGTTT]




>consensus_1531#0
ATTTATAGCAAAGCAGATACTAGTGATAACGTCAAATTGTTTATACGTTGAGCTTTACAA
AAGAAGCTTTTATGATTTATTAACTTATCTGTAACAAATAAAAGACCGGGTATGTAATCA
ACTTTACGTGAGCACAACAAAAGGATGTAAAATTGATAATTAACCACGGTTTTCACAGCA
AATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATACAAGACTGAAGTGCT
TATAATTACTAGAGGAAAGCATCACAGATTGTTGTGTAAACAGTGTAAATAAACACACAA
AAATGGTCACTAAAATTATGGCCTGAAAAAAAAAACAGAAATTAAAAGTTTTAGCGAAGC
AAACTCAAATTCGTCAATAGAAATTTCAAGTCAAACTGTAGTTTAGTAGTAATTCATTAA
ATGAAAATAGATAAGCTGTACACATATATAAATATATCATTTTTATGGGTACGAAAATAC
ATTCAGACAAAGTTTGCCGAAGTAAATCGTGAAGAGAAATAAAACTTCGAAAACAATTAA
AGATCATTTGAGAATAGCTATTATATATAATATATATATATATATATNATAAGTGGTGTA
TGAAAAGTTT

consensusID : consensus_1531#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [ACTCAATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTGTAATACATTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGAAACAAATAAAACACCGGGTTTGTAATCACACTTTACGTGAGCACAACAAAAGGGTGTAAAATTGATAATTAACCACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATTCAAGACTGAAGTGCTTATTATTACTAGAGGAAAGC]

[+] EMBL AI976363             [ACTCAATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTGTAATACATTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGAAACAAATAAAACACCGGGTTTGTAATCACACTTTACGTGAGCACAACAAAAGGGTGTAAAATTGATAATTAACCACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAATTCAAGACTGAAGTGCTTATTATTACTAGAGGAAAGC]




>consensus_1531#1
ACTCAATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTGTAATA
CATTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGAAACAAATAAAACA
CCGGGTTTGTAATCACACTTTACGTGAGCACAACAAAAGGGTGTAAAATTGATAATTAAC
CACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAAT
TCAAGACTGAAGTGCTTATTATTACTAGAGGAAAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1531#0      ---ATTTATAGCAAAGCAGATACTAGTGATAACGTCAAATTGTTT------------ATA 45
consensus_1531#1      ACTCAATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTGTAATA 60
                            **  * ** **** * *  *  **    *    ** ***            ***

consensus_1531#0      CGTTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGTAACAAATAAAAGA 105
consensus_1531#1      CATTGAGCTTTACAAAAGAAGCTTTTATGATTTATTAACTTATCTGAAACAAATAAAACA 120
                      * ******************************************** *********** *

consensus_1531#0      CCGGGTATGTAATCA-ACTTTACGTGAGCACAACAAAAGGATGTAAAATTGATAATTAAC 164
consensus_1531#1      CCGGGTTTGTAATCACACTTTACGTGAGCACAACAAAAGGGTGTAAAATTGATAATTAAC 180
                      ****** ******** ************************ *******************

consensus_1531#0      CACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAAT 224
consensus_1531#1      CACGGTTTTCACAGCAAATATAAACAGGAATATACGAAATTAACCACCAAGATGTTTAAT 240
                      ************************************************************

consensus_1531#0      ACAAGACTGAAGTGCTTATAATTACTAGAGGAAAGCATCACAGATTGTTGTGTAAACAGT 284
consensus_1531#1      TCAAGACTGAAGTGCTTATTATTACTAGAGGAAAGC------------------------ 276
                       ****************** ****************                        

consensus_1531#0      GTAAATAAACACACAAAAATGGTCACTAAAATTATGGCCTGAAAAAAAAAACAGAAATTA 344
consensus_1531#1      ------------------------------------------------------------
                                                                                  

consensus_1531#0      AAAGTTTTAGCGAAGCAAACTCAAATTCGTCAATAGAAATTTCAAGTCAAACTGTAGTTT 404
consensus_1531#1      ------------------------------------------------------------
                                                                                  

consensus_1531#0      AGTAGTAATTCATTAAATGAAAATAGATAAGCTGTACACATATATAAATATATCATTTTT 464
consensus_1531#1      ------------------------------------------------------------
                                                                                  

consensus_1531#0      ATGGGTACGAAAATACATTCAGACAAAGTTTGCCGAAGTAAATCGTGAAGAGAAATAAAA 524
consensus_1531#1      ------------------------------------------------------------
                                                                                  

consensus_1531#0      CTTCGAAAACAATTAAAGATCATTTGAGAATAGCTATTATATATAATATATATATATATA 584
consensus_1531#1      ------------------------------------------------------------
                                                                                  

consensus_1531#0      TATNATAAGTGGTGTATGAAAAGTTT 610
consensus_1531#1      --------------------------