cluster # 1534

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Schistosoma mansoni
cluster # 1534 cluster # 1534 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1534#0 length = 437 sequences # 1

consensus_1534#1 length = 328 sequences # 1

consensusID : consensus_1534#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [GTTTTGGACTTTTAAAACTCCCATCTATGCCAGAATTACGAACTGGTAATGTTAGTTCATTTAATCCATCAAATGTGGACATATCAAAATTAACTTATCGGGATAAAAGTGTATCTAAACAACGTGACTTAATGCAGTCATCTAATGAAACACATAAAGAAAACAAACCTAGATGGTTAATTAAAAAGGAGAAAAATAAGGCATGGATTGCTAAAAAGAAACGAGCACGTAAAATTAAAGCATTAAAGAAACAACATTTAGTTAATGAATCTTCACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCGATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTAAAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGAAAGCTCCTCTTGATATAGTC]

[+] EMBL CD191662             [GTTTTGGACTTTTAAAACTCCCATCTATGCCAGAATTACGAACTGGTAATGTTAGTTCATTTAATCCATCAAATGTGGACATATCAAAATTAACTTATCGGGATAAAAGTGTATCTAAACAACGTGACTTAATGCAGTCATCTAATGAAACACATAAAGAAAACAAACCTAGATGGTTAATTAAAAAGGAGAAAAATAAGGCATGGATTGCTAAAAAGAAACGAGCACGTAAAATTAAAGCATTAAAGAAACAACATTTAGTTAATGAATCTTCACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCGATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTAAAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGAAAGCTCCTCTTGATATAGTC]




>consensus_1534#0
GTTTTGGACTTTTAAAACTCCCATCTATGCCAGAATTACGAACTGGTAATGTTAGTTCAT
TTAATCCATCAAATGTGGACATATCAAAATTAACTTATCGGGATAAAAGTGTATCTAAAC
AACGTGACTTAATGCAGTCATCTAATGAAACACATAAAGAAAACAAACCTAGATGGTTAA
TTAAAAAGGAGAAAAATAAGGCATGGATTGCTAAAAAGAAACGAGCACGTAAAATTAAAG
CATTAAAGAAACAACATTTAGTTAATGAATCTTCACATCTGGAAATGTGTGAAAAGAAAA
ATAAGGAGTTAATAGCGATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTG
CCGACTATAGATTATTAAAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGAAAG
CTCCTCTTGATATAGTC

consensusID : consensus_1534#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [ATTCGGCACGACAACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCAATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTANAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGACAGCTTCTCTTGATATAGTCGACATGCCACAAAGAGACAGGTTGAAAGAAATTGGAATCTGCTTTCTTACCCGCCAACATCTTTCTGTATATGTTCATTAACTATCAAATATACTTGCCTTTTGTAAATAAAAAAAATACTTGTGCCATACATTGAATGCTAACAAAGAGAT]

[+] EMBL AI014206             [ATTCGGCACGACAACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCAATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTANAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGACAGCTTCTCTTGATATAGTCGACATGCCACAAAGAGACAGGTTGAAAGAAATTGGAATCTGCTTTCTTACCCGCCAACATCTTTCTGTATATGTTCATTAACTATCAAATATACTTGCCTTTTGTAAATAAAAAAAATACTTGTGCCATACATTGAATGCTAACAAAGAGAT]




>consensus_1534#1
ATTCGGCACGACAACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCAATTA
AACAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTANAGA
AATCCTATAAGGGAGAGATCAAGGAAAATTGATTGACAGCTTCTCTTGATATAGTCGACA
TGCCACAAAGAGACAGGTTGAAAGAAATTGGAATCTGCTTTCTTACCCGCCAACATCTTT
CTGTATATGTTCATTAACTATCAAATATACTTGCCTTTTGTAAATAAAAAAAATACTTGT
GCCATACATTGAATGCTAACAAAGAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1534#0      GTTTTGGACTTTTAAAACTCCCATCTATGCCAGAATTACGAACTGGTAATGTTAGTTCAT 60
consensus_1534#1      ----------------------------------------------------------AT 2
                                                                                **

consensus_1534#0      TTAATCCATCAA-ATGTGGACATATCAAAATTAACTTATCGGGATAAAAGTGTATCTAAA 119
consensus_1534#1      TCGGCACGACAACATCTGGAAATGTGTGAAAAGAAAAATAAGGAGTTAATAGCAATTAAA 62
                      *     *  *** ** **** ** *   **   *   **  ***   **  * *  ****

consensus_1534#0      CAACGTGACTTAATGCAGTCATCTAATGAAACACATAAAGAAAACAAACCTAGATGGTTA 179
consensus_1534#1      CAAGATAATAGTGTAAAAGATATTGATGAATTACTTGCCGACTATAGATTATTANAGAAA 122
                      ***  * *     *  *      * *****  ** *   **  * * *     *  *  *

consensus_1534#0      ATTAAAAAGGAGAAAAATAAGGCATGGATTGCTAAAAAGAAACGAGC-ACGTAAAATTAA 238
consensus_1534#1      TCCTATAAGGGAGAGATCAAGGAA--AATTGATTGACAGCTTCTCTTGATATAGTCGACA 180
                          * ****   * *  **** *   **** *  * **   *     *  **      *

consensus_1534#0      AGCATTAAAGAAACAACATTTAGTTAATGAATCTTCACATCTGGAAATGTGTGAAAAGAA 298
consensus_1534#1      TGCCACAAAGAGACAGGTTGAAAGAAATTGGAATCTGCTTTCTTACCCGCCAACATCTTT 240
                       **   ***** ***   *  *   ***     *   * *    *   *     *     

consensus_1534#0      AAATAAGGAGTTAATAGCGATTAAACAAGATAATAGTGTAAAAGATATTGATGAATTACT 358
consensus_1534#1      CTGTATATGTTCATTAACTATCAAAT---ATACTTGCCTTTTGTAAATAAAAAAAATACT 297
                         **     * * ** * ** ***    *** * *  *     * **  *  ** ****

consensus_1534#0      TGCCGACTATAGATTATTAAAGAAATCCTATAAGGGAGAGATCAAGGAAAATTGATTGAA 418
consensus_1534#1      TGT--GCCATACATTG-------AATGCTAACAAAGAGAT-------------------- 328
                      **    * *** ***        *** ***  *  ****                     

consensus_1534#0      AGCTCCTCTTGATATAGTC 437
consensus_1534#1      -------------------