cluster # 155

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Schistosoma mansoni
cluster # 155 cluster # 155 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_155#0 length = 536 sequences # 1

consensus_155#1 length = 363 sequences # 1

consensusID : consensus_155#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [GTATTCTACCCACATATTCCTCTGTTCTTGAATCTCCATGATTGTCTTTCCTTCTTTGTCCTTGACGGGTCTCTCCGGTCCACTGTATCTTCTTGCTAGTTTCTTCTTTGTATCATACAGTTGCTTTATATTTCCTTTTCTTACAGCTTTTTCCGCCTTCGTTTCTGGTTCTCCCATGTATTTCTGCTTGTCGGCTTTAAAGCTCCTCTTCACTTGCCTGTTTGCTTCTGAGTACTCTGTTTGCGCCTTGAATTTTTCTGCTCGTGTTCGACTGTTGTTATTTGTTATCTTCTTGCTCTTCCTCTCTTGAATCTTGTCTAGGGTTTTCATAGTGATCCATTCCTTATGGTGATGCTTGTTGCGACCTAGCAGCTCCTGACACGTTGAAGTTAGTGCTCTTTGATCCCTTTCCAGTTGTCCTCCATCGTAGTTTCTTGTTCTTTCAGTAGATCCTGTAAAGCTTGGAACCTGTTGTTGAGAGTTATCTTGAATTCGTTGAGTTTGTTAGTATCTCGAATGAAGTCTGTATTGAACCC]

[+] EMBL CD085475             [GTATTCTACCCACATATTCCTCTGTTCTTGAATCTCCATGATTGTCTTTCCTTCTTTGTCCTTGACGGGTCTCTCCGGTCCACTGTATCTTCTTGCTAGTTTCTTCTTTGTATCATACAGTTGCTTTATATTTCCTTTTCTTACAGCTTTTTCCGCCTTCGTTTCTGGTTCTCCCATGTATTTCTGCTTGTCGGCTTTAAAGCTCCTCTTCACTTGCCTGTTTGCTTCTGAGTACTCTGTTTGCGCCTTGAATTTTTCTGCTCGTGTTCGACTGTTGTTATTTGTTATCTTCTTGCTCTTCCTCTCTTGAATCTTGTCTAGGGTTTTCATAGTGATCCATTCCTTATGGTGATGCTTGTTGCGACCTAGCAGCTCCTGACACGTTGAAGTTAGTGCTCTTTGATCCCTTTCCAGTTGTCCTCCATCGTAGTTTCTTGTTCTTTCAGTAGATCCTGTAAAGCTTGGAACCTGTTGTTGAGAGTTATCTTGAATTCGTTGAGTTTGTTAGTATCTCGAATGAAGTCTGTATTGAACCC]




>consensus_155#0
GTATTCTACCCACATATTCCTCTGTTCTTGAATCTCCATGATTGTCTTTCCTTCTTTGTC
CTTGACGGGTCTCTCCGGTCCACTGTATCTTCTTGCTAGTTTCTTCTTTGTATCATACAG
TTGCTTTATATTTCCTTTTCTTACAGCTTTTTCCGCCTTCGTTTCTGGTTCTCCCATGTA
TTTCTGCTTGTCGGCTTTAAAGCTCCTCTTCACTTGCCTGTTTGCTTCTGAGTACTCTGT
TTGCGCCTTGAATTTTTCTGCTCGTGTTCGACTGTTGTTATTTGTTATCTTCTTGCTCTT
CCTCTCTTGAATCTTGTCTAGGGTTTTCATAGTGATCCATTCCTTATGGTGATGCTTGTT
GCGACCTAGCAGCTCCTGACACGTTGAAGTTAGTGCTCTTTGATCCCTTTCCAGTTGTCC
TCCATCGTAGTTTCTTGTTCTTTCAGTAGATCCTGTAAAGCTTGGAACCTGTTGTTGAGA
GTTATCTTGAATTCGTTGAGTTTGTTAGTATCTCGAATGAAGTCTGTATTGAACCC

consensusID : consensus_155#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTATATAATAAAGAAATTTTTAATGATTGATTTGTAACACTTGTGCATAATGGACAGGACGAGTGAGACAAAATGATAGCACAATGGAAATGTGAAACAAATTAGAGTTTAACTAGATGTATTACGAGGAATTAAGTTCATAAATCAATTTTAGCGATAACCGGTGTAATATTGACTCATTGCTGGCGGAGCGGCAGCAGTTGGGACCCCACCTGGAGGAGCACCGCCAACTGGGATAGTACCATACCCAGATGGATAAGTAGAATACCCAGGGTAATAGCTTGCATAAGGATTTGCGGCTGGTGTCTGTGGTGTTACTGTTGCGGTTGGAGCACTGGGACGCT]

[+] EMBL AI395350             [TTTTTTTTTTTTTTTTTTTTTATATAATAAAGAAATTTTTAATGATTGATTTGTAACACTTGTGCATAATGGACAGGACGAGTGAGACAAAATGATAGCACAATGGAAATGTGAAACAAATTAGAGTTTAACTAGATGTATTACGAGGAATTAAGTTCATAAATCAATTTTAGCGATAACCGGTGTAATATTGACTCATTGCTGGCGGAGCGGCAGCAGTTGGGACCCCACCTGGAGGAGCACCGCCAACTGGGATAGTACCATACCCAGATGGATAAGTAGAATACCCAGGGTAATAGCTTGCATAAGGATTTGCGGCTGGTGTCTGTGGTGTTACTGTTGCGGTTGGAGCACTGGGACGCT]




>consensus_155#1
TTTTTTTTTTTTTTTTTTTTTATATAATAAAGAAATTTTTAATGATTGATTTGTAACACT
TGTGCATAATGGACAGGACGAGTGAGACAAAATGATAGCACAATGGAAATGTGAAACAAA
TTAGAGTTTAACTAGATGTATTACGAGGAATTAAGTTCATAAATCAATTTTAGCGATAAC
CGGTGTAATATTGACTCATTGCTGGCGGAGCGGCAGCAGTTGGGACCCCACCTGGAGGAG
CACCGCCAACTGGGATAGTACCATACCCAGATGGATAAGTAGAATACCCAGGGTAATAGC
TTGCATAAGGATTTGCGGCTGGTGTCTGTGGTGTTACTGTTGCGGTTGGAGCACTGGGAC
GCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_155#0      GTATTCTACCCACATATTCCTCTGTTCTTGAATCTCCATGATTGTCTTTCCTTCTTTGTC 60
consensus_155#1      ------------------------------------------------------------
                                                                                 

consensus_155#0      CTTGACGGGTCTCTCCGGTCCACTGTATCTTCTTGCTAGTTTCTTCTTTGTATCATACAG 120
consensus_155#1      ------------------------------------------------------------
                                                                                 

consensus_155#0      TTGCTTTATATTTCCTTTTCTTACAGCTTTTTCCGCCTTCGTTTCTGGTTCTCCCATGTA 180
consensus_155#1      -------------------------TTTTTTTTTTTTTTTTTTTTTATATAATAAAGAAA 35
                                                *****     **  *** *   *     *   *

consensus_155#0      TTTCTGCTTGTCGGCTT-TAAAGCTCCTCTTCACTTGCCTGTTTGCTTCTGAGTACTCTG 239
consensus_155#1      TTTTTAATGATTGATTTGTAACACTTGTGCATAATGGACAGGACGAGTGAGA-CAAAATG 94
                     *** *  *  * *  ** ***  **  *    * * * * *   *  *  **  *   **

consensus_155#0      TTTGCGCCTTGAATTTTTCTGCTCGTGTTCGACTGTTGTTATTTGTTATCTTCTTGCTCT 299
consensus_155#1      ATAGCACAATGGAAATGTG-AAACAAATTAGAGTTTAACTAGATGTA--TTACGAGGAAT 151
                      * ** *  ** *  * *     *   ** ** * *   **  ***    * *  *   *

consensus_155#0      TCCTCTCTTGAATCTTGTCTAGGGTTTTCATAGTGATCCATTCCTTATGGTGATGCTTGT 359
consensus_155#1      TAAGTTCATAAATC--------AATTTTAGCGATAACCGGTGTAATATTGACTCATTGCT 203
                     *    ** * ****          ****     * * *  *    *** *      *  *

consensus_155#0      TGCGACCTAGCAGCTCCTGACACGTTGAAGTTAGTGCTCTTTGATCCCTTTCCAGTTGTC 419
consensus_155#1      GGCGGAGCGGCAGCAGTTGGGACCCC--ACCTGGAG------GAGCACCGCCAACTGGGA 255
                      ***     *****   **  **     *  * * *      ** * *   * * * *  

consensus_155#0      CTCCATCGTAGTTTCTTGTTCTTTCAGTAGATCCTGTAAAGCTTGGAACCTGTTGTTGAG 479
consensus_155#1      TAGTACCATA---CCCAGATGGATAAGTAGAATACCCAGGG--TAATAGCTTGCATAAGG 310
                         * * **    *  * *   * ******      *  *  *   * **    *   *

consensus_155#0      AGTTAT--CTTGAATTCGTTGAGTTTGTTAGTATCTCGAATGAAGTCTGTATTGAACCC- 536
consensus_155#1      ATTTGCGGCTGGTGTCTGTGG----TGTTACTGTTGCGGTTGGAGCAC---TGGGACGCT 363
                     * **    ** *  *  ** *    ***** * *  **  ** **      * * ** *