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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1562 cluster # 1562       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1562#0 length = 614 sequences # 1  
consensus_1562#1 length = 314 sequences # 1  

consensusID : consensus_1562#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence
                              [AGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAGTATATGGTCAATATCAACTGCATAATTGTCCATTGTTTATTGTTTTCAGTCCGAGACGTCGGTCAATTACATCCACTCATGTGTAGATACGCTTAACACTCATAATAAGTTCACCCCGTCTCGCATTTTACCCATTACCACTATTATTACTGTTAGTGAAACCTCATCTTACCTTATATTCTATCATCGCTCGTCCGCCTTTCTTACATTTCCGAGTGCTGAATTATTTCCTCCCTAGTTTTAAGTCAGTAAACTGATAATTTTTTGTCCCTGTCATCTGGTTCACTTTGATCTCTAATGCTAAGATCATAATACAGCCAAATTGGCGACTGCCCTATAAAAAAATAGCTAACGGCTCTAGAATCCTCAGTGTCCTAGAACAAAAGCATTATACCATGCATGTATATATTCCCTGTTACTTATTTTTTTCTGTACGTCTCACGGACTTTTGTTTGAAATTCGAAATATTCACACATGTCACTAATCTTTTGGTTGTAGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACT]

[+] EMBL CD078594             [AGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAGTATATGGTCAATATCAACTGCATAATTGTCCATTGTTTATTGTTTTCAGTCCGAGACGTCGGTCAATTACATCCACTCATGTGTAGATACGCTTAACACTCATAATAAGTTCACCCCGTCTCGCATTTTACCCATTACCACTATTATTACTGTTAGTGAAACCTCATCTTACCTTATATTCTATCATCGCTCGTCCGCCTTTCTTACATTTCCGAGTGCTGAATTATTTCCTCCCTAGTTTTAAGTCAGTAAACTGATAATTTTTTGTCCCTGTCATCTGGTTCACTTTGATCTCTAATGCTAAGATCATAATACAGCCAAATTGGCGACTGCCCTATAAAAAAATAGCTAACGGCTCTAGAATCCTCAGTGTCCTAGAACAAAAGCATTATACCATGCATGTATATATTCCCTGTTACTTATTTTTTTCTGTACGTCTCACGGACTTTTGTTTGAAATTCGAAATATTCACACATGTCACTAATCTTTTGGTTGTAGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACT]


>consensus_1562#0 AGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAG TATATGGTCAATATCAACTGCATAATTGTCCATTGTTTATTGTTTTCAGTCCGAGACGTC GGTCAATTACATCCACTCATGTGTAGATACGCTTAACACTCATAATAAGTTCACCCCGTC TCGCATTTTACCCATTACCACTATTATTACTGTTAGTGAAACCTCATCTTACCTTATATT CTATCATCGCTCGTCCGCCTTTCTTACATTTCCGAGTGCTGAATTATTTCCTCCCTAGTT TTAAGTCAGTAAACTGATAATTTTTTGTCCCTGTCATCTGGTTCACTTTGATCTCTAATG CTAAGATCATAATACAGCCAAATTGGCGACTGCCCTATAAAAAAATAGCTAACGGCTCTA GAATCCTCAGTGTCCTAGAACAAAAGCATTATACCATGCATGTATATATTCCCTGTTACT TATTTTTTTCTGTACGTCTCACGGACTTTTGTTTGAAATTCGAAATATTCACACATGTCA CTAATCTTTTGGTTGTAGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGG GATTTCGGTCAACT



consensusID : consensus_1562#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence
                              [GGCCAGATTCGGCCGAGGTTCAAGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAGTATATGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACTTGTACCTCTAAAGAACAAATTATCTTTAATAATGGCTGTTCAGTTATATCCAACTAAATTTTGCTCGGATGCACTTCGCAGATTTCTTTCAACTTCTCTTATTAGAAACAAGAAAGAAGTAAAATACGCAGTTAGTAAAAATGTCACAACGGTTGAAGGAGTAATTGTCC]

[+] EMBL CD077480             [GGCCAGATTCGGCCGAGGTTCAAGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAGTATATGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACTTGTACCTCTAAAGAACAAATTATCTTTAATAATGGCTGTTCAGTTATATCCAACTAAATTTTGCTCGGATGCACTTCGCAGATTTCTTTCAACTTCTCTTATTAGAAACAAGAAAGAAGTAAAATACGCAGTTAGTAAAAATGTCACAACGGTTGAAGGAGTAATTGTCC]


>consensus_1562#1 GGCCAGATTCGGCCGAGGTTCAAGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTG AATATTGGATACGTATGGACAGTATATGGGGGGACACTTTATCCTCGGATAGATTCGCTA ACCGATTTGGGATTTCGGTCAACTTGTACCTCTAAAGAACAAATTATCTTTAATAATGGC TGTTCAGTTATATCCAACTAAATTTTGCTCGGATGCACTTCGCAGATTTCTTTCAACTTC TCTTATTAGAAACAAGAAAGAAGTAAAATACGCAGTTAGTAAAAATGTCACAACGGTTGA AGGAGTAATTGTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1562#0      ----------------------AGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTG 38
consensus_1562#1      GGCCAGATTCGGCCGAGGTTCAAGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTG 60
                                            **************************************

consensus_1562#0      AATATTGGATACGTATGGACAGTATATGGTCAATATCAACTGCATAATTGTCCATTGTTT 98
consensus_1562#1      AATATTGGATACGTATGGACAGTATATGGGGG------GACACTTTATCCTCGGATAGAT 114
                      *****************************             * * **  **   *   *

consensus_1562#0      ATTGTTTTCAGTCCGAGACGTCGGTCAATTACATCCACTCATGTGTAGAT-ACGCTTAAC 157
consensus_1562#1      TCGCTAACCGATTTGGGATTTCGGTCAACTTGTACCTCTAAAGAACAAATTATCTTTAAT 174
                          *   *  *  * **  ******** *    ** ** * *   * ** *   **** 

consensus_1562#0      ACTCATAATAAGTTCACCCCGTCTCGCATTTTACCCATTACCACTATTATTACTGTTAGT 217
consensus_1562#1      AATGGCTGTTCAGTTATATCCAACTAAATTTTGCTCGGATGCACTTCGCAGATTTCTTTC 234
                      * *     *    * *   *       ***** * *     ****      * *  *   

consensus_1562#0      GAAACCTCATCTTACCTTATATTCTATCATCGCTCGTCCGCCTTTCTTACATTTC-CGAG 276
consensus_1562#1      AACTTCTCTTATTAGAAACAAGAAAGAAGTAAAATACGCAGTTAGTAAAAATGTCACAAC 294
                       *   *** * ***      *        *        *   *     * ** ** * * 

consensus_1562#0      TGCTGAATTATTTCCTCCCTAGTTTTAAGTCAGTAAACTGATAATTTTTTGTCCCTGTCA 336
consensus_1562#1      GGTTGAAGGAGTAATTGTCC---------------------------------------- 314
                       * ****  * *   *  *                                         

consensus_1562#0      TCTGGTTCACTTTGATCTCTAATGCTAAGATCATAATACAGCCAAATTGGCGACTGCCCT 396
consensus_1562#1      ------------------------------------------------------------
                                                                                  

consensus_1562#0      ATAAAAAAATAGCTAACGGCTCTAGAATCCTCAGTGTCCTAGAACAAAAGCATTATACCA 456
consensus_1562#1      ------------------------------------------------------------
                                                                                  

consensus_1562#0      TGCATGTATATATTCCCTGTTACTTATTTTTTTCTGTACGTCTCACGGACTTTTGTTTGA 516
consensus_1562#1      ------------------------------------------------------------
                                                                                  

consensus_1562#0      AATTCGAAATATTCACACATGTCACTAATCTTTTGGTTGTAGGGGGGACACTTTATCCTC 576
consensus_1562#1      ------------------------------------------------------------
                                                                                  

consensus_1562#0      GGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACT 614
consensus_1562#1      --------------------------------------
                                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)