These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1562#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [AGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAGTATATGGTCAATATCAACTGCATAATTGTCCATTGTTTATTGTTTTCAGTCCGAGACGTCGGTCAATTACATCCACTCATGTGTAGATACGCTTAACACTCATAATAAGTTCACCCCGTCTCGCATTTTACCCATTACCACTATTATTACTGTTAGTGAAACCTCATCTTACCTTATATTCTATCATCGCTCGTCCGCCTTTCTTACATTTCCGAGTGCTGAATTATTTCCTCCCTAGTTTTAAGTCAGTAAACTGATAATTTTTTGTCCCTGTCATCTGGTTCACTTTGATCTCTAATGCTAAGATCATAATACAGCCAAATTGGCGACTGCCCTATAAAAAAATAGCTAACGGCTCTAGAATCCTCAGTGTCCTAGAACAAAAGCATTATACCATGCATGTATATATTCCCTGTTACTTATTTTTTTCTGTACGTCTCACGGACTTTTGTTTGAAATTCGAAATATTCACACATGTCACTAATCTTTTGGTTGTAGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACT] [+] EMBL CD078594 [AGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAGTATATGGTCAATATCAACTGCATAATTGTCCATTGTTTATTGTTTTCAGTCCGAGACGTCGGTCAATTACATCCACTCATGTGTAGATACGCTTAACACTCATAATAAGTTCACCCCGTCTCGCATTTTACCCATTACCACTATTATTACTGTTAGTGAAACCTCATCTTACCTTATATTCTATCATCGCTCGTCCGCCTTTCTTACATTTCCGAGTGCTGAATTATTTCCTCCCTAGTTTTAAGTCAGTAAACTGATAATTTTTTGTCCCTGTCATCTGGTTCACTTTGATCTCTAATGCTAAGATCATAATACAGCCAAATTGGCGACTGCCCTATAAAAAAATAGCTAACGGCTCTAGAATCCTCAGTGTCCTAGAACAAAAGCATTATACCATGCATGTATATATTCCCTGTTACTTATTTTTTTCTGTACGTCTCACGGACTTTTGTTTGAAATTCGAAATATTCACACATGTCACTAATCTTTTGGTTGTAGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACT] consensusID : consensus_1562#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [GGCCAGATTCGGCCGAGGTTCAAGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAGTATATGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACTTGTACCTCTAAAGAACAAATTATCTTTAATAATGGCTGTTCAGTTATATCCAACTAAATTTTGCTCGGATGCACTTCGCAGATTTCTTTCAACTTCTCTTATTAGAAACAAGAAAGAAGTAAAATACGCAGTTAGTAAAAATGTCACAACGGTTGAAGGAGTAATTGTCC] [+] EMBL CD077480 [GGCCAGATTCGGCCGAGGTTCAAGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTGAATATTGGATACGTATGGACAGTATATGGGGGGACACTTTATCCTCGGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACTTGTACCTCTAAAGAACAAATTATCTTTAATAATGGCTGTTCAGTTATATCCAACTAAATTTTGCTCGGATGCACTTCGCAGATTTCTTTCAACTTCTCTTATTAGAAACAAGAAAGAAGTAAAATACGCAGTTAGTAAAAATGTCACAACGGTTGAAGGAGTAATTGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1562#0 ----------------------AGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTG 38 consensus_1562#1 GGCCAGATTCGGCCGAGGTTCAAGTTTGGTCCTGTCTAGGTACTCTTGACGGGAATTGTG 60 ************************************** consensus_1562#0 AATATTGGATACGTATGGACAGTATATGGTCAATATCAACTGCATAATTGTCCATTGTTT 98 consensus_1562#1 AATATTGGATACGTATGGACAGTATATGGGGG------GACACTTTATCCTCGGATAGAT 114 ***************************** * * ** ** * * consensus_1562#0 ATTGTTTTCAGTCCGAGACGTCGGTCAATTACATCCACTCATGTGTAGAT-ACGCTTAAC 157 consensus_1562#1 TCGCTAACCGATTTGGGATTTCGGTCAACTTGTACCTCTAAAGAACAAATTATCTTTAAT 174 * * * * ** ******** * ** ** * * * ** * **** consensus_1562#0 ACTCATAATAAGTTCACCCCGTCTCGCATTTTACCCATTACCACTATTATTACTGTTAGT 217 consensus_1562#1 AATGGCTGTTCAGTTATATCCAACTAAATTTTGCTCGGATGCACTTCGCAGATTTCTTTC 234 * * * * * * ***** * * **** * * * consensus_1562#0 GAAACCTCATCTTACCTTATATTCTATCATCGCTCGTCCGCCTTTCTTACATTTC-CGAG 276 consensus_1562#1 AACTTCTCTTATTAGAAACAAGAAAGAAGTAAAATACGCAGTTAGTAAAAATGTCACAAC 294 * *** * *** * * * * * ** ** * * consensus_1562#0 TGCTGAATTATTTCCTCCCTAGTTTTAAGTCAGTAAACTGATAATTTTTTGTCCCTGTCA 336 consensus_1562#1 GGTTGAAGGAGTAATTGTCC---------------------------------------- 314 * **** * * * * consensus_1562#0 TCTGGTTCACTTTGATCTCTAATGCTAAGATCATAATACAGCCAAATTGGCGACTGCCCT 396 consensus_1562#1 ------------------------------------------------------------ consensus_1562#0 ATAAAAAAATAGCTAACGGCTCTAGAATCCTCAGTGTCCTAGAACAAAAGCATTATACCA 456 consensus_1562#1 ------------------------------------------------------------ consensus_1562#0 TGCATGTATATATTCCCTGTTACTTATTTTTTTCTGTACGTCTCACGGACTTTTGTTTGA 516 consensus_1562#1 ------------------------------------------------------------ consensus_1562#0 AATTCGAAATATTCACACATGTCACTAATCTTTTGGTTGTAGGGGGGACACTTTATCCTC 576 consensus_1562#1 ------------------------------------------------------------ consensus_1562#0 GGATAGATTCGCTAACCGATTTGGGATTTCGGTCAACT 614 consensus_1562#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||