cluster # 1572

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Schistosoma mansoni
cluster # 1572 cluster # 1572 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1572#0 length = 303 sequences # 1

consensus_1572#1 length = 237 sequences # 1

consensusID : consensus_1572#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [TCACAATTTGTATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGGTGATGGATTGCAACGAGCACCAGTGAATTTTCAAGTGTTTTCCAGAGCAATTTAGTCCATTGGTGCTGCACATACATCAAGTGCACTTTGTGCTACACGTTTACTCATCAGAACGATATCCTGGTCTCTACGATAAACGCCTTGAATGTTTGGCCCGTGACAGGTTATTATTCGTCTTATGAAAGACTCCATCCAGATTTTCTGGAAATCAGTCGAATTTCCAGAAGTGATTCACGTGAAGCT]

[+] EMBL CD061343             [TCACAATTTGTATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGGTGATGGATTGCAACGAGCACCAGTGAATTTTCAAGTGTTTTCCAGAGCAATTTAGTCCATTGGTGCTGCACATACATCAAGTGCACTTTGTGCTACACGTTTACTCATCAGAACGATATCCTGGTCTCTACGATAAACGCCTTGAATGTTTGGCCCGTGACAGGTTATTATTCGTCTTATGAAAGACTCCATCCAGATTTTCTGGAAATCAGTCGAATTTCCAGAAGTGATTCACGTGAAGCT]




>consensus_1572#0
TCACAATTTGTATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGG
TGATGGATTGCAACGAGCACCAGTGAATTTTCAAGTGTTTTCCAGAGCAATTTAGTCCAT
TGGTGCTGCACATACATCAAGTGCACTTTGTGCTACACGTTTACTCATCAGAACGATATC
CTGGTCTCTACGATAAACGCCTTGAATGTTTGGCCCGTGACAGGTTATTATTCGTCTTAT
GAAAGACTCCATCCAGATTTTCTGGAAATCAGTCGAATTTCCAGAAGTGATTCACGTGAA
GCT

consensusID : consensus_1572#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence

                              [ATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGGTGATGGATTGCAACAGCACCAGGAATTTTCAATGTTTTCCGAGAATTTGTCCTTGTTCGACATAATCAATGCATTTGTGTATGCTTTATCATCAGAAGATATCCTGGCTCTAGATAAAGCCTTGAAGTTTGGCCGTGAAGGTTATTATTGTCTTATGAAAACTCCATCCAGTTTTCTGAAATCAGTGA]

[-] EMBL CD128582             [ATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGGTGATGGATTGCAACAGCACCAGGAATTTTCAATGTTTTCCGAGAATTTGTCCTTGTTCGACATAATCAATGCATTTGTGTATGCTTTATCATCAGAAGATATCCTGGCTCTAGATAAAGCCTTGAAGTTTGGCCGTGAAGGTTATTATTGTCTTATGAAAACTCCATCCAGTTTTCTGAAATCAGTGA]




>consensus_1572#1
ATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGGTGATGGATTGC
AACAGCACCAGGAATTTTCAATGTTTTCCGAGAATTTGTCCTTGTTCGACATAATCAATG
CATTTGTGTATGCTTTATCATCAGAAGATATCCTGGCTCTAGATAAAGCCTTGAAGTTTG
GCCGTGAAGGTTATTATTGTCTTATGAAAACTCCATCCAGTTTTCTGAAATCAGTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1572#0      TCACAATTTGTATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGG 60
consensus_1572#1      -----------ATGAAGAAAGTCCTGAACCTTTGTTTAAACTGCAGTCGAACGAGTCTGG 49
                                 *************************************************

consensus_1572#0      TGATGGATTGCAACGAGCACCAGTGAATTTTCAAGTGTTTTCCAGAGCAATTTAGTCCAT 120
consensus_1572#1      TGATGGATTGCAAC-AGCACCAG-GAATTTTCAA-TGTTTTCCGAG--AATTTGTCCT-- 102
                      ************** ******** ********** ********     *****   *   

consensus_1572#0      TGGTGCTGCACATACATCAAGTGCACTTTGTGCTACACGTTTACTCATCAGAACGATATC 180
consensus_1572#1      ---TGTTCGACATA-ATCAA-TGCA-TTTGTG---TATGCTTTATCATCAGAA-GATATC 152
                         ** *  ***** ***** **** ******    * * **  ********* ******

consensus_1572#0      CTGGTCTCTACGATAAACGCCTTGAATGTTTGGCCCGTGACAGGTTATTATTCGTCTTAT 240
consensus_1572#1      CTGG-CTCTA-GATAAA-GCCTTGAA-GTTTGGCC-GTGA-AGGTTATTATT-GTCTTAT 205
                      **** ***** ****** ******** ******** **** *********** *******

consensus_1572#0      GAAAGACTCCATCCAGATTTTCTGGAAATCAGTCGAATTTCCAGAAGTGATTCACGTGAA 300
consensus_1572#1      GAAA-ACTCCATCCAG-TTTTCTG-AAATCAGTGA------------------------- 237
                      **** *********** ******* ********                           

consensus_1572#0      GCT 303
consensus_1572#1      ---