cluster # 1583

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Schistosoma mansoni
cluster # 1583 cluster # 1583 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1583#0 length = 350 sequences # 1

consensus_1583#1 length = 280 sequences # 1

consensusID : consensus_1583#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence

                              [AACGTTCAGCCATATTTAACATTTCTTTAGTAACATTTACACCACGTAAATCTTTTGGACTCGGATTATAACTTAATAAATTATNCACTTGTCAATTTCGTTGTGTCTACGTAAGTCGTTTATGTATTCAACCANNGGTGCANNTCACGATNANNACGGACNANNTCACACGTCGGAACACCACGTAGNNCCACAACGTTCTTCACTCGCAAGAAAANTTGGGATAACCANTATTTTGGGGGTACACCATNNATAACANAGTAACGCAACGGATNNAGAGGAGCGCNAGATTCGAATCCGNAACTATTTANGATAACTTGGCTTAAACTTCTANGGCTCCNAATAGNNGA]

[+] EMBL CD061396             [AACGTTCAGCCATATTTAACATTTCTTTAGTAACATTTACACCACGTAAATCTTTTGGACTCGGATTATAACTTAATAAATTATNCACTTGTCAATTTCGTTGTGTCTACGTAAGTCGTTTATGTATTCAACCANNGGTGCANNTCACGATNANNACGGACNANNTCACACGTCGGAACACCACGTAGNNCCACAACGTTCTTCACTCGCAAGAAAANTTGGGATAACCANTATTTTGGGGGTACACCATNNATAACANAGTAACGCAACGGATNNAGAGGAGCGCNAGATTCGAATCCGNAACTATTTANGATAACTTGGCTTAAACTTCTANGGCTCCNAATAGNNGA]




>consensus_1583#0
AACGTTCAGCCATATTTAACATTTCTTTAGTAACATTTACACCACGTAAATCTTTTGGAC
TCGGATTATAACTTAATAAATTATNCACTTGTCAATTTCGTTGTGTCTACGTAAGTCGTT
TATGTATTCAACCANNGGTGCANNTCACGATNANNACGGACNANNTCACACGTCGGAACA
CCACGTAGNNCCACAACGTTCTTCACTCGCAAGAAAANTTGGGATAACCANTATTTTGGG
GGTACACCATNNATAACANAGTAACGCAACGGATNNAGAGGAGCGCNAGATTCGAATCCG
NAACTATTTANGATAACTTGGCTTAAACTTCTANGGCTCCNAATAGNNGA

consensusID : consensus_1583#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [AACGTTCAGCCATATTTAACATTTCTTTAGTAACATTTACACCACGTAAATCTTTTGGACTCGGATTATAATTTAATAAATTATCACTTGTAATCGTTTGTCTACGTAAGTGTTTTGTATCACCAGGTGCATCACGATAACGATTTTCATCACCATCAACAGACCAACCGCAAGCTAACATCGTTTTCAGTGTATCTGTTACAGGATGAATGTATCTCATTTGCTCCTGTGGTGGCAACTGACCTGAAAGAGCGTAAATTTGGATGTGTTCTTCGAACTT]

[-] EMBL CD061381             [AACGTTCAGCCATATTTAACATTTCTTTAGTAACATTTACACCACGTAAATCTTTTGGACTCGGATTATAATTTAATAAATTATCACTTGTAATCGTTTGTCTACGTAAGTGTTTTGTATCACCAGGTGCATCACGATAACGATTTTCATCACCATCAACAGACCAACCGCAAGCTAACATCGTTTTCAGTGTATCTGTTACAGGATGAATGTATCTCATTTGCTCCTGTGGTGGCAACTGACCTGAAAGAGCGTAAATTTGGATGTGTTCTTCGAACTT]




>consensus_1583#1
AACGTTCAGCCATATTTAACATTTCTTTAGTAACATTTACACCACGTAAATCTTTTGGAC
TCGGATTATAATTTAATAAATTATCACTTGTAATCGTTTGTCTACGTAAGTGTTTTGTAT
CACCAGGTGCATCACGATAACGATTTTCATCACCATCAACAGACCAACCGCAAGCTAACA
TCGTTTTCAGTGTATCTGTTACAGGATGAATGTATCTCATTTGCTCCTGTGGTGGCAACT
GACCTGAAAGAGCGTAAATTTGGATGTGTTCTTCGAACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1583#0      AACGTTCAGCCATATTTAACATTTCTTTAGTAACATTTACACCACGTAAATCTTTTGGAC 60
consensus_1583#1      AACGTTCAGCCATATTTAACATTTCTTTAGTAACATTTACACCACGTAAATCTTTTGGAC 60
                      ************************************************************

consensus_1583#0      TCGGATTATAACTTAATAAATTATNCACTTGTCAATTTCGTTGTGTCTACGTAAGTCGTT 120
consensus_1583#1      TCGGATTATAATTTAATAAATTATC-ACTTGTAA---TCGTT-TGTCTACGTAAGTGTTT 115
                      *********** ************  ****** *   ***** *************  **

consensus_1583#0      TATGTATTCAACCANNGGTGCANNTCACGATNANNACGGACNANNTCACACGTCGGAACA 180
consensus_1583#1      TGT-------ATCACCAG-GTGCATCACGATAACGATTTTCATCACCAT-CAACAGACCA 166
                      * *       * **   * *    ******* *  *    *     **  *  * ** **

consensus_1583#0      CCACGTAGNNCCACAACGTTCTTCACTCGCAAGAAAANTTGGGATAACCANTATTTTGGG 240
consensus_1583#1      AC-CGCAAGCTAACATCGTTTTC--------AGTGTATCTGTTA----CAGGAT---GAA 210
                       * ** *     *** **** *         **   *  **  *    **  **   *  

consensus_1583#0      GGTACACCATNNATAACANAGTAACGCAACGGATNNAGAGGAGCGCNAGATTCGAATCCG 300
consensus_1583#1      TGTATCTCATTTGCTCCTGTG-GTGGCAACTGACCTGAAAGAGCG-TAAATTTGGATGTG 268
                       ***   ***      *   *    ***** **     * *****  * *** * **  *

consensus_1583#0      NAACTATTTANGATAACTTGGCTTAAACTTCTANGGCTCCNAATAGNNGA 350
consensus_1583#1      T-----TCTTCG--AACTT------------------------------- 280
                            * *  *  *****