cluster # 159

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Schistosoma mansoni
cluster # 159 cluster # 159 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_159#0 length = 677 sequences # 1

consensus_159#1 length = 598 sequences # 1

consensusID : consensus_159#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence

                              [AAGAATATATATATATATATATAAAAGAAGCGGTAAAATATGCTCTTGATTTATTTTTATTTGATCACATGTATATCACCAATTTACAGTCATGAAAGATATTCATATGATGATCATGATGACTTTGAAGGTTCATTTTTCGACGATGATTATGGTTCACATGGTGGGTATCATTCAGGAAATTATGATAATCATCCTCAACATCCCCCAGCACATAATTCACCTGGAGAAGGTGAACCGTCACCTCCATATCCTGATGATGATCAAGAACCACCTCGAGCACCTCCTGAAAAACCTGAAGCACCACATGAGCCTGATGGCGACGAGAATTATGGTCGGCCACACTATAACCATAGTCGTTATCACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTTAGTTCTCAGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGTAGGTGAAGAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAATTATATACCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTATACCTTCTAATTCAAACGAACAACCTAGTGGTTACGTTNGAGAAAACGTTAATAATGACGAAGGCGAATATAATAAACCCGATGA]

[+] EMBL AI068226             [AAGAATATATATATATATATATAAAAGAAGCGGTAAAATATGCTCTTGATTTATTTTTATTTGATCACATGTATATCACCAATTTACAGTCATGAAAGATATTCATATGATGATCATGATGACTTTGAAGGTTCATTTTTCGACGATGATTATGGTTCACATGGTGGGTATCATTCAGGAAATTATGATAATCATCCTCAACATCCCCCAGCACATAATTCACCTGGAGAAGGTGAACCGTCACCTCCATATCCTGATGATGATCAAGAACCACCTCGAGCACCTCCTGAAAAACCTGAAGCACCACATGAGCCTGATGGCGACGAGAATTATGGTCGGCCACACTATAACCATAGTCGTTATCACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTTAGTTCTCAGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGTAGGTGAAGAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAATTATATACCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTATACCTTCTAATTCAAACGAACAACCTAGTGGTTACGTTNGAGAAAACGTTAATAATGACGAAGGCGAATATAATAAACCCGATGA]




>consensus_159#0
AAGAATATATATATATATATATAAAAGAAGCGGTAAAATATGCTCTTGATTTATTTTTAT
TTGATCACATGTATATCACCAATTTACAGTCATGAAAGATATTCATATGATGATCATGAT
GACTTTGAAGGTTCATTTTTCGACGATGATTATGGTTCACATGGTGGGTATCATTCAGGA
AATTATGATAATCATCCTCAACATCCCCCAGCACATAATTCACCTGGAGAAGGTGAACCG
TCACCTCCATATCCTGATGATGATCAAGAACCACCTCGAGCACCTCCTGAAAAACCTGAA
GCACCACATGAGCCTGATGGCGACGAGAATTATGGTCGGCCACACTATAACCATAGTCGT
TATCACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTTAGTTCTC
AGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGTAGGTGAA
GAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAATTATATA
CCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTATACCTTCT
AATTCAAACGAACAACCTAGTGGTTACGTTNGAGAAAACGTTAATAATGACGAAGGCGAA
TATAATAAACCCGATGA

consensusID : consensus_159#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence

                              [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGTTGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCCCCTCTTTCCTTTCGTTCCTTTCGTTCCTTTGGTTCCTTTCGTTCCTTTCTTGGATGATTTTGTTTTGCTTGATACGCGTTTGTTTGACGGTTTGTATTTCTTATATTTAACATATCTAGTAGGCTTATATTCGTTCTCTTCTGTTTCATCGGGTTTATTATCTTCGCCTTCCTCATTATTAACGTTTTCTTCTACGTTACCACTAGGTTGTTCGTTTGAATTAGAAGGTATAGGANTAGG]

[+] EMBL AI976525             [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGTTGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCCCCTCTTTCCTTTCGTTCCTTTCGTTCCTTTGGTTCCTTTCGTTCCTTTCTTGGATGATTTTGTTTTGCTTGATACGCGTTTGTTTGACGGTTTGTATTTCTTATATTTAACATATCTAGTAGGCTTATATTCGTTCTCTTCTGTTTCATCGGGTTTATTATCTTCGCCTTCCTCATTATTAACGTTTTCTTCTACGTTACCACTAGGTTGTTCGTTTGAATTAGAAGGTATAGGANTAGG]




>consensus_159#1
ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAAAT
AAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTAT
TATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGA
TCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTT
CGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTG
GATGTGGTGTTGGTTGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCCCC
TCTTTCCTTTCGTTCCTTTCGTTCCTTTGGTTCCTTTCGTTCCTTTCTTGGATGATTTTG
TTTTGCTTGATACGCGTTTGTTTGACGGTTTGTATTTCTTATATTTAACATATCTAGTAG
GCTTATATTCGTTCTCTTCTGTTTCATCGGGTTTATTATCTTCGCCTTCCTCATTATTAA
CGTTTTCTTCTACGTTACCACTAGGTTGTTCGTTTGAATTAGAAGGTATAGGANTAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_159#0      AAGAATATATATATATATATATAAAAGAAGCGGTAAAATATGCTCTTGATTTATTTTTAT 60
consensus_159#1      ------------------ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTT 42
                                       *    ** * *** * *    *** * **  *** ***** *

consensus_159#0      TTGATCACAT--GTATATCACCAATTTACAGTCATGAAAGATATTCATATGATGATCATG 118
consensus_159#1      TTTTTTTTTTTAATAAATAAATAATTTGTATTTATTAAATGTAAT-GTATAAATAGGGTT 101
                     **  *    *   ** ** *  *****  * * ** ***  ** *  *** *  *   * 

consensus_159#0      ATGACTTTGAAGGTTCATTTTTCGACGATGATTATGGTTCACATGGTGGGTATCATTCAG 178
consensus_159#1      ATGTTATTA-----CCATTATT--ATTATTATTATTATTATAACAGTTCACTTGTATAAA 154
                     ***   **       **** **  *  ** *****  **   *  **     *   * * 

consensus_159#0      GAAATTATGATAATC-ATCCTCAACATCCCCCAGCACATAATTCACCTGGAGAAGGTGAA 237
consensus_159#1      CAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCAT-------TTGTA 207
                      *  * **  ** *  *   * ** ***      **  *  **  * *        ** *

consensus_159#0      CCGTCACCTCCATATCCTGATGATGATCAAGAACCACCTCGAGCACCTCCTGAAAAACCT 297
consensus_159#1      TT-TTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTC-------- 258
                        * *    * ***  * *  *  ****     *   *    ** ** **         

consensus_159#0      GAAGCACCACATGAGCCTGATGGCGACGAGAATTATGGTCGGCCACACTATAACCATAGT 357
consensus_159#1      ----CGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGT 314
                         *  *   *  ***   * * *       ** ****    *    * *     * **

consensus_159#0      CGTTATC-ACGGATATTATGATGATTTAGATAAATATGATAGTGAATTGAGAGAGTTAGT 416
consensus_159#1      TGTGGTTTGTACCTATTTCCATATTTTTTATACTTTCCTTTTCCCCTCTTTCCTTTCGTT 374
                      **  *       ****   **  ***  ***  *    *      *        *   *

consensus_159#0      TCTCAGTGGACATCGGTATAAACCAAGATATTATGAAGGAGAAGGTTATGGATTAGTAGG 476
consensus_159#1      CCTTTCGTTCCTTTGGTTCCTTTCGTTCCTTTCTTG----GATGATTTTGTTTTGCTTGA 430
                      **       * * ***      *      ** *      ** * ** **  **  * * 

consensus_159#0      TGAAGAAACGTATGTTAAAAAACCAAAAGATCCTAGTAAATATGATCAATATGGAAATTA 536
consensus_159#1      T----ACGCGTTTGTTTGACGGTTTGTATTTCTTA-TATTTAACATATCTAGTAGGCTTA 485
                     *    *  *** ****  *        *  ** ** **  **  **   **      ***

consensus_159#0      TATACCTGATTATCAGACACCACAACCTTCTCCTCCTCCTCCTCATCCTACTCCTATACC 596
consensus_159#1      TATTCGTTCTCTTCTGTTTCATCGGGTTTATTATCTTCGCCTTCCTCATTAT----TAAC 541
                     *** * *  *  ** *   *  *    ** *  ** **  * ** ** *  *    ** *

consensus_159#0      TTCTAATTCAAACGAACAACCTAGTGGTTACGTTNGAGAAAACGTTAATAATGACGAAGG 656
consensus_159#1      GTTTTCTTCTACGTTACCACTAGGTTGTT-CGTTTGAATTAGAAGGTATAG-GANTAGG- 598
                      * *  *** *    ** **   ** *** **** **   *      ***  **  * * 

consensus_159#0      CGAATATAATAAACCCGATGA 677
consensus_159#1      ---------------------