cluster # 1607

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Schistosoma mansoni
cluster # 1607 cluster # 1607 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1607#0 length = 711 sequences # 1

consensus_1607#1 length = 206 sequences # 1

consensusID : consensus_1607#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 711
fasta sequence

                              [ACATGTGACATATCCTTGGATGATAAATTTGTGGTTACCGGTTCCGGAGACAAACGTGCAAATTTGTATGAGGTTATCTTCACTCCTCAACGATAAATTAATAACATTCCTTAAATTTATGTGTGCAAAATACAACAATATCTCATACTAATGATCTGAGATCATTCATTTCATTAATGATCCGTTTCGCCTCTCTTTATGACTATAATCCTACATGATATATTGTATCACAACTATCCTGTATGAACTGACATTAGTTAGTTTATTAATGTCTGTTTATGTTTCTTACTTATTGTTATTGTTAGTATTTTTCCTGGTGTAATCATTGCTTATATTTTCTATCTGTAACTGTTTTTTTCCTTCTAAATTTTCTCGATTGTGTGTGTGATCGCATTGTTAGCTTTCCATAAGTGAGTGACACTGTTGTTAACGATGATTTGTATGTGTTGAAATTTCGCAGACATAATGCACAAAAACTTTTCCATTTCTTATTTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGAAATGATCTGGCCGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTATAATTACCATAAATATTATTATGAATCTTTGCATTTACCTCCATTATGTGAA]

[+] EMBL BF936892             [ACATGTGACATATCCTTGGATGATAAATTTGTGGTTACCGGTTCCGGAGACAAACGTGCAAATTTGTATGAGGTTATCTTCACTCCTCAACGATAAATTAATAACATTCCTTAAATTTATGTGTGCAAAATACAACAATATCTCATACTAATGATCTGAGATCATTCATTTCATTAATGATCCGTTTCGCCTCTCTTTATGACTATAATCCTACATGATATATTGTATCACAACTATCCTGTATGAACTGACATTAGTTAGTTTATTAATGTCTGTTTATGTTTCTTACTTATTGTTATTGTTAGTATTTTTCCTGGTGTAATCATTGCTTATATTTTCTATCTGTAACTGTTTTTTTCCTTCTAAATTTTCTCGATTGTGTGTGTGATCGCATTGTTAGCTTTCCATAAGTGAGTGACACTGTTGTTAACGATGATTTGTATGTGTTGAAATTTCGCAGACATAATGCACAAAAACTTTTCCATTTCTTATTTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGAAATGATCTGGCCGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTATAATTACCATAAATATTATTATGAATCTTTGCATTTACCTCCATTATGTGAA]




>consensus_1607#0
ACATGTGACATATCCTTGGATGATAAATTTGTGGTTACCGGTTCCGGAGACAAACGTGCA
AATTTGTATGAGGTTATCTTCACTCCTCAACGATAAATTAATAACATTCCTTAAATTTAT
GTGTGCAAAATACAACAATATCTCATACTAATGATCTGAGATCATTCATTTCATTAATGA
TCCGTTTCGCCTCTCTTTATGACTATAATCCTACATGATATATTGTATCACAACTATCCT
GTATGAACTGACATTAGTTAGTTTATTAATGTCTGTTTATGTTTCTTACTTATTGTTATT
GTTAGTATTTTTCCTGGTGTAATCATTGCTTATATTTTCTATCTGTAACTGTTTTTTTCC
TTCTAAATTTTCTCGATTGTGTGTGTGATCGCATTGTTAGCTTTCCATAAGTGAGTGACA
CTGTTGTTAACGATGATTTGTATGTGTTGAAATTTCGCAGACATAATGCACAAAAACTTT
TCCATTTCTTATTTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTT
ATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGA
AATGATCTGGCCGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTAT
AATTACCATAAATATTATTATGAATCTTTGCATTTACCTCCATTATGTGAA

consensusID : consensus_1607#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [TCGACGGCCAGAATTCGGCACGAGGTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGAAATGATCTGGCGGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTATAATTACAATAATTA]

[+] EMBL CD077674             [TCGACGGCCAGAATTCGGCACGAGGTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGAAATGATCTGGCGGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTATAATTACAATAATTA]




>consensus_1607#1
TCGACGGCCAGAATTCGGCACGAGGTGAATACTTACCGTTCTCTTTGTTCTCATCATTAT
TGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAA
ATGCACAGTGGAAATGATCTGGCGGCCGATCCGATCATCATTCTTCATTGACTGTATAAT
AATAATTATTATAATTACAATAATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1607#0      ACATGTGACATATCCTTGGATGATAAATTTGTGGTTACCGGTTCCGGAGACAAACGTGCA 60
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      AATTTGTATGAGGTTATCTTCACTCCTCAACGATAAATTAATAACATTCCTTAAATTTAT 120
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      GTGTGCAAAATACAACAATATCTCATACTAATGATCTGAGATCATTCATTTCATTAATGA 180
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      TCCGTTTCGCCTCTCTTTATGACTATAATCCTACATGATATATTGTATCACAACTATCCT 240
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      GTATGAACTGACATTAGTTAGTTTATTAATGTCTGTTTATGTTTCTTACTTATTGTTATT 300
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      GTTAGTATTTTTCCTGGTGTAATCATTGCTTATATTTTCTATCTGTAACTGTTTTTTTCC 360
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      TTCTAAATTTTCTCGATTGTGTGTGTGATCGCATTGTTAGCTTTCCATAAGTGAGTGACA 420
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      CTGTTGTTAACGATGATTTGTATGTGTTGAAATTTCGCAGACATAATGCACAAAAACTTT 480
consensus_1607#1      ------------------------------------------TCGACGGCCAGAA--TTC 16
                                                                   * *  ** **  ** 

consensus_1607#0      TCCATTTCTTATTTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTT 540
consensus_1607#1      GGCA----CGAGGTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTT 72
                        **      *  ***********************************************

consensus_1607#0      ATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGA 600
consensus_1607#1      ATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGA 132
                      ************************************************************

consensus_1607#0      AATGATCTGGCCGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTAT 660
consensus_1607#1      AATGATCTGGCGGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTAT 192
                      *********** ************************************************

consensus_1607#0      AATTACCATAAATATTATTATGAATCTTTGCATTTACCTCCATTATGTGAA 711
consensus_1607#1      AATTACAATAATTA------------------------------------- 206
                      ****** **** **