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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1607 cluster # 1607       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1607#0 length = 711 sequences # 1  
consensus_1607#1 length = 206 sequences # 1  

consensusID : consensus_1607#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 711
fasta sequence
                              [ACATGTGACATATCCTTGGATGATAAATTTGTGGTTACCGGTTCCGGAGACAAACGTGCAAATTTGTATGAGGTTATCTTCACTCCTCAACGATAAATTAATAACATTCCTTAAATTTATGTGTGCAAAATACAACAATATCTCATACTAATGATCTGAGATCATTCATTTCATTAATGATCCGTTTCGCCTCTCTTTATGACTATAATCCTACATGATATATTGTATCACAACTATCCTGTATGAACTGACATTAGTTAGTTTATTAATGTCTGTTTATGTTTCTTACTTATTGTTATTGTTAGTATTTTTCCTGGTGTAATCATTGCTTATATTTTCTATCTGTAACTGTTTTTTTCCTTCTAAATTTTCTCGATTGTGTGTGTGATCGCATTGTTAGCTTTCCATAAGTGAGTGACACTGTTGTTAACGATGATTTGTATGTGTTGAAATTTCGCAGACATAATGCACAAAAACTTTTCCATTTCTTATTTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGAAATGATCTGGCCGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTATAATTACCATAAATATTATTATGAATCTTTGCATTTACCTCCATTATGTGAA]

[+] EMBL BF936892             [ACATGTGACATATCCTTGGATGATAAATTTGTGGTTACCGGTTCCGGAGACAAACGTGCAAATTTGTATGAGGTTATCTTCACTCCTCAACGATAAATTAATAACATTCCTTAAATTTATGTGTGCAAAATACAACAATATCTCATACTAATGATCTGAGATCATTCATTTCATTAATGATCCGTTTCGCCTCTCTTTATGACTATAATCCTACATGATATATTGTATCACAACTATCCTGTATGAACTGACATTAGTTAGTTTATTAATGTCTGTTTATGTTTCTTACTTATTGTTATTGTTAGTATTTTTCCTGGTGTAATCATTGCTTATATTTTCTATCTGTAACTGTTTTTTTCCTTCTAAATTTTCTCGATTGTGTGTGTGATCGCATTGTTAGCTTTCCATAAGTGAGTGACACTGTTGTTAACGATGATTTGTATGTGTTGAAATTTCGCAGACATAATGCACAAAAACTTTTCCATTTCTTATTTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGAAATGATCTGGCCGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTATAATTACCATAAATATTATTATGAATCTTTGCATTTACCTCCATTATGTGAA]


>consensus_1607#0 ACATGTGACATATCCTTGGATGATAAATTTGTGGTTACCGGTTCCGGAGACAAACGTGCA AATTTGTATGAGGTTATCTTCACTCCTCAACGATAAATTAATAACATTCCTTAAATTTAT GTGTGCAAAATACAACAATATCTCATACTAATGATCTGAGATCATTCATTTCATTAATGA TCCGTTTCGCCTCTCTTTATGACTATAATCCTACATGATATATTGTATCACAACTATCCT GTATGAACTGACATTAGTTAGTTTATTAATGTCTGTTTATGTTTCTTACTTATTGTTATT GTTAGTATTTTTCCTGGTGTAATCATTGCTTATATTTTCTATCTGTAACTGTTTTTTTCC TTCTAAATTTTCTCGATTGTGTGTGTGATCGCATTGTTAGCTTTCCATAAGTGAGTGACA CTGTTGTTAACGATGATTTGTATGTGTTGAAATTTCGCAGACATAATGCACAAAAACTTT TCCATTTCTTATTTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTT ATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGA AATGATCTGGCCGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTAT AATTACCATAAATATTATTATGAATCTTTGCATTTACCTCCATTATGTGAA



consensusID : consensus_1607#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence
                              [TCGACGGCCAGAATTCGGCACGAGGTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGAAATGATCTGGCGGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTATAATTACAATAATTA]

[+] EMBL CD077674             [TCGACGGCCAGAATTCGGCACGAGGTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGAAATGATCTGGCGGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTATAATTACAATAATTA]


>consensus_1607#1 TCGACGGCCAGAATTCGGCACGAGGTGAATACTTACCGTTCTCTTTGTTCTCATCATTAT TGATTTTCAGTTATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAA ATGCACAGTGGAAATGATCTGGCGGCCGATCCGATCATCATTCTTCATTGACTGTATAAT AATAATTATTATAATTACAATAATTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1607#0      ACATGTGACATATCCTTGGATGATAAATTTGTGGTTACCGGTTCCGGAGACAAACGTGCA 60
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      AATTTGTATGAGGTTATCTTCACTCCTCAACGATAAATTAATAACATTCCTTAAATTTAT 120
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      GTGTGCAAAATACAACAATATCTCATACTAATGATCTGAGATCATTCATTTCATTAATGA 180
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      TCCGTTTCGCCTCTCTTTATGACTATAATCCTACATGATATATTGTATCACAACTATCCT 240
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      GTATGAACTGACATTAGTTAGTTTATTAATGTCTGTTTATGTTTCTTACTTATTGTTATT 300
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      GTTAGTATTTTTCCTGGTGTAATCATTGCTTATATTTTCTATCTGTAACTGTTTTTTTCC 360
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      TTCTAAATTTTCTCGATTGTGTGTGTGATCGCATTGTTAGCTTTCCATAAGTGAGTGACA 420
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      CTGTTGTTAACGATGATTTGTATGTGTTGAAATTTCGCAGACATAATGCACAAAAACTTT 480
consensus_1607#1      ------------------------------------------TCGACGGCCAGAA--TTC 16
                                                                   * *  ** **  ** 

consensus_1607#0      TCCATTTCTTATTTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTT 540
consensus_1607#1      GGCA----CGAGGTGAATACTTACCGTTCTCTTTGTTCTCATCATTATTGATTTTCAGTT 72
                        **      *  ***********************************************

consensus_1607#0      ATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGA 600
consensus_1607#1      ATTGTTGCTAATGTCAGCACTATAATCATCTCTTATACTCATAGAAAAATGCACAGTGGA 132
                      ************************************************************

consensus_1607#0      AATGATCTGGCCGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTAT 660
consensus_1607#1      AATGATCTGGCGGCCGATCCGATCATCATTCTTCATTGACTGTATAATAATAATTATTAT 192
                      *********** ************************************************

consensus_1607#0      AATTACCATAAATATTATTATGAATCTTTGCATTTACCTCCATTATGTGAA 711
consensus_1607#1      AATTACAATAATTA------------------------------------- 206
                      ****** **** **                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)