These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [ACGAGGCGTAGCGTACTTTTACTTGACTATACTAAACCTTTAAATAAACCTTAAGTTATTTTTCATACCTTGGTTCTTTTTTAAAGGGTTGATGATCAAATCCTTAGTGTCAATGACATCAGTTTAGAGCATGTTACAAATATGGAAGCAGTGAAAACATTAAGACAAGCTGGTAATCAACTACATTTAGTTGTGAGACGATTTGTTGGTAATACTGGAGTAGCAACACCGGATAGAACAGTTGTGCAACATTCTCCATCCTATCGATCACCGGAAGTCATGTCTGATTTAGAGGACAGTGGTTCAACTCCAATATGGTACGAAGTTCAACTCCGTAAACCACGTTCAAATTATGGCCTCGGTTTCAGTATTGCTGGTGGTCAAGATGTTGAGAATGAAAACTTTCCTTCAACTGGAATATTTAT] [+] EMBL CD084143 [ACGAGGCGTAGCGTACTTTTACTTGACTATACTAAACCTTTAAATAAACCTTAAGTTATTTTTCATACCTTGGTTCTTTTTTAAAGGGTTGATGATCAAATCCTTAGTGTCAATGACATCAGTTTAGAGCATGTTACAAATATGGAAGCAGTGAAAACATTAAGACAAGCTGGTAATCAACTACATTTAGTTGTGAGACGATTTGTTGGTAATACTGGAGTAGCAACACCGGATAGAACAGTTGTGCAACATTCTCCATCCTATCGATCACCGGAAGTCATGTCTGATTTAGAGGACAGTGGTTCAACTCCAATATGGTACGAAGTTCAACTCCGTAAACCACGTTCAAATTATGGCCTCGGTTTCAGTATTGCTGGTGGTCAAGATGTTGAGAATGAAAACTTTCCTTCAACTGGAATATTTAT] consensusID : consensus_1626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [TCGGTCCGAGGGTTTCAATAAAAGGAGAATGGGAATATCTGGATATTATACTTAAACGTGATTCAACTGCAGTAGGTGGATTTGGTTTTAGTATTGCCGGAGGGATTGATAATCCTATTACGGACGTGGATCATGGAATTTATGTCACAAGAATAGCGCCTAATGGATGCGCAGATCGAGATGGTAAACTAAGGGTTGATGATCAAATCCTTAGTGTCAATGACATCAGTTTAGAGCATGTTACANATATGGAAGCAGTGAAAACATTTA] [+] EMBL CD077744 [TCGGTCCGAGGGTTTCAATAAAAGGAGAATGGGAATATCTGGATATTATACTTAAACGTGATTCAACTGCAGTAGGTGGATTTGGTTTTAGTATTGCCGGAGGGATTGATAATCCTATTACGGACGTGGATCATGGAATTTATGTCACAAGAATAGCGCCTAATGGATGCGCAGATCGAGATGGTAAACTAAGGGTTGATGATCAAATCCTTAGTGTCAATGACATCAGTTTAGAGCATGTTACANATATGGAAGCAGTGAAAACATTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1626#0 ACGAGGCGTAGCGTACTTTTACTTGACTATACTAAACCTTTAAATAAACCTTAAGTTATT 60 consensus_1626#1 ------------------------------------------------------------ consensus_1626#0 TTTCATACCTTGGTTCTTTTTTAAAGGGTTGATGATCAAATCCTTAGTGTCAATGACATC 120 consensus_1626#1 ----------------------------------------------------------TC 2 ** consensus_1626#0 AGTTTAGAGCATGTTACAAATATGGAAGCAGTGAAAACATTAAGACAAGCTGGTAATCAA 180 consensus_1626#1 GGTCCGAGG---GTTTCAATAAAAGGAG-AATGGGAATATCTGGATATTATACTTA--AA 56 ** * *** *** * * ** * ** ** ** ** * * * * ** consensus_1626#0 CTACATTTAGTTGTGAGACGATTTGTTGGTAATACTGGAGTAGCAACACCGGATAGAACA 240 consensus_1626#1 CGTGATTCAACTGCAGTAGGTGGATTTGGTTTTA--------GTATTGCCGGAGGGATTG 108 * *** * ** * * ***** ** * * ***** ** consensus_1626#0 GTTGTGCAACATTCTCCATCCTATCGATCACCGGAAGTCATGTCTGATTTAGAGGACAGT 300 consensus_1626#1 ATAATCC--TATTACGGA---CGTGGATCAT-GGAATTTATGTCACA-----AGAATAGC 157 * * * *** * * ***** **** * ***** * ** * ** consensus_1626#0 GGTTCAACTCCAATATGGTACGAAGTTCAACTCCGTAAACCACG--TTCA-AATTATGGC 357 consensus_1626#1 G-------CCTAATG-GATGCGCAGATCGAGATGGTAAACTAAGGGTTGATGATCAAATC 209 * * *** * * ** ** ** * ****** * * ** * ** * * consensus_1626#0 CTCGGTTTCAGTATTGCTGGTGGTCAAGATGTTGAGAATGAAAACTTTCCTTCAACTGGA 417 consensus_1626#1 CTTAGTGTCAATGACATCAGTTTAGAGCATGTTACANATATGGAAG------CAGTGAAA 263 ** ** *** * ** * ***** ** * ** * consensus_1626#0 ATATTTAT 425 consensus_1626#1 ACATTTA- 270 * ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||