cluster # 1643

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Schistosoma mansoni
cluster # 1643 cluster # 1643 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1643#0 length = 593 sequences # 1

consensus_1643#1 length = 303 sequences # 1

consensusID : consensus_1643#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [TCTAATTTAACATCAGTTCCATCATTACTACAACCGGCTACTGGTGTTGGACCAATGAAGTTGACGACGACGACAATGAATAAACCAAAACCTGTTGATATAACAAATACTTTAATATCATATAATGTGAATGCAATCAATAGCACATCTGATATGATGAATAAATCTACTACACAACCAAATCGTATAGGTACAGGTATACCTTTGGCTTTAATCACACCACCAACTACTCAACACCAATCATATGAAAAGAACGGTGTTTTCGATAATAATAACTCTCTGTATTATCATTCGAATAATAATGTTGAACAGTTACAATCAACTATTTTACCTAAATCAATTATTCCACACAATAGTAGTAATAATTTTAACTCATTGAATTCTATACCATTTTCTCCAACAATTCTAATATGATGAGACTGTTCAACAACAACAACCTATTCCAAATGCATGACATATCAATTATTCCCGACAACATCATCCATTACAATGCCAACACCAATGTTTAATCAAAATGTATCCAATTCTAATAATCTAATAAAACCATTATCTAAATGTGAGATAGATGATTTATTAAGCTGACAATGAATTCA]

[+] EMBL SMAA40613            [TCTAATTTAACATCAGTTCCATCATTACTACAACCGGCTACTGGTGTTGGACCAATGAAGTTGACGACGACGACAATGAATAAACCAAAACCTGTTGATATAACAAATACTTTAATATCATATAATGTGAATGCAATCAATAGCACATCTGATATGATGAATAAATCTACTACACAACCAAATCGTATAGGTACAGGTATACCTTTGGCTTTAATCACACCACCAACTACTCAACACCAATCATATGAAAAGAACGGTGTTTTCGATAATAATAACTCTCTGTATTATCATTCGAATAATAATGTTGAACAGTTACAATCAACTATTTTACCTAAATCAATTATTCCACACAATAGTAGTAATAATTTTAACTCATTGAATTCTATACCATTTTCTCCAACAATTCTAATATGATGAGACTGTTCAACAACAACAACCTATTCCAAATGCATGACATATCAATTATTCCCGACAACATCATCCATTACAATGCCAACACCAATGTTTAATCAAAATGTATCCAATTCTAATAATCTAATAAAACCATTATCTAAATGTGAGATAGATGATTTATTAAGCTGACAATGAATTCA]




>consensus_1643#0
TCTAATTTAACATCAGTTCCATCATTACTACAACCGGCTACTGGTGTTGGACCAATGAAG
TTGACGACGACGACAATGAATAAACCAAAACCTGTTGATATAACAAATACTTTAATATCA
TATAATGTGAATGCAATCAATAGCACATCTGATATGATGAATAAATCTACTACACAACCA
AATCGTATAGGTACAGGTATACCTTTGGCTTTAATCACACCACCAACTACTCAACACCAA
TCATATGAAAAGAACGGTGTTTTCGATAATAATAACTCTCTGTATTATCATTCGAATAAT
AATGTTGAACAGTTACAATCAACTATTTTACCTAAATCAATTATTCCACACAATAGTAGT
AATAATTTTAACTCATTGAATTCTATACCATTTTCTCCAACAATTCTAATATGATGAGAC
TGTTCAACAACAACAACCTATTCCAAATGCATGACATATCAATTATTCCCGACAACATCA
TCCATTACAATGCCAACACCAATGTTTAATCAAAATGTATCCAATTCTAATAATCTAATA
AAACCATTATCTAAATGTGAGATAGATGATTTATTAAGCTGACAATGAATTCA

consensusID : consensus_1643#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [TCGCGGCAAGAATTCGGTCCGAGGCGTATAGGTACAGGTATACCTTTGGCTTTAATCACACCACCAACTACTCAACACCAATCATATGAAAAGAACGGTGTTTTCGATAATAATAACTCTCTGTATTATCATTCGAATAATAATGTTGAACAGTTACAATCAACTATTTTACCTAAATCAATTATTCCACACAATAGTAGTAATAATTTTAACTCATTGAATTCTATACCATTTTCTCCAACAAATTCTAATATGATGAGACCTGTTCAACAACTTCAACCTATTCCAAATGCAATGACATAT]

[+] EMBL CD077782             [TCGCGGCAAGAATTCGGTCCGAGGCGTATAGGTACAGGTATACCTTTGGCTTTAATCACACCACCAACTACTCAACACCAATCATATGAAAAGAACGGTGTTTTCGATAATAATAACTCTCTGTATTATCATTCGAATAATAATGTTGAACAGTTACAATCAACTATTTTACCTAAATCAATTATTCCACACAATAGTAGTAATAATTTTAACTCATTGAATTCTATACCATTTTCTCCAACAAATTCTAATATGATGAGACCTGTTCAACAACTTCAACCTATTCCAAATGCAATGACATAT]




>consensus_1643#1
TCGCGGCAAGAATTCGGTCCGAGGCGTATAGGTACAGGTATACCTTTGGCTTTAATCACA
CCACCAACTACTCAACACCAATCATATGAAAAGAACGGTGTTTTCGATAATAATAACTCT
CTGTATTATCATTCGAATAATAATGTTGAACAGTTACAATCAACTATTTTACCTAAATCA
ATTATTCCACACAATAGTAGTAATAATTTTAACTCATTGAATTCTATACCATTTTCTCCA
ACAAATTCTAATATGATGAGACCTGTTCAACAACTTCAACCTATTCCAAATGCAATGACA
TAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1643#0      TCTAATTTAACATCAGTTCCATCATTACTACAACCGGCTACTGGTGTTGGACCAATGAAG 60
consensus_1643#1      ------------------------------------------------------------
                                                                                  

consensus_1643#0      TTGACGACGACGACAATGAATAAACCAAAACCTGTTGATATAACAAATACTTTAATATCA 120
consensus_1643#1      ------------------------------------------------------------
                                                                                  

consensus_1643#0      TATAATGTGAATGCAATCAATAGCACATCTGATATGATGAATAAATCTACTACACAACCA 180
consensus_1643#1      ---------------------------------TCGCGGCAAGAATTCGGT------CCG 21
                                                         *  * *  ***    *      ** 

consensus_1643#0      AATCGTATAGGTACAGGTATACCTTTGGCTTTAATCACACCACCAACTACTCAACACCAA 240
consensus_1643#1      AGGCGTATAGGTACAGGTATACCTTTGGCTTTAATCACACCACCAACTACTCAACACCAA 81
                      *  *********************************************************

consensus_1643#0      TCATATGAAAAGAACGGTGTTTTCGATAATAATAACTCTCTGTATTATCATTCGAATAAT 300
consensus_1643#1      TCATATGAAAAGAACGGTGTTTTCGATAATAATAACTCTCTGTATTATCATTCGAATAAT 141
                      ************************************************************

consensus_1643#0      AATGTTGAACAGTTACAATCAACTATTTTACCTAAATCAATTATTCCACACAATAGTAGT 360
consensus_1643#1      AATGTTGAACAGTTACAATCAACTATTTTACCTAAATCAATTATTCCACACAATAGTAGT 201
                      ************************************************************

consensus_1643#0      AATAATTTTAACTCATTGAATTCTATACCATTTTCTCCAACAA-TTCTAATATGATGAGA 419
consensus_1643#1      AATAATTTTAACTCATTGAATTCTATACCATTTTCTCCAACAAATTCTAATATGATGAGA 261
                      ******************************************* ****************

consensus_1643#0      C-TGTTCAACAACAACAACCTATTCCAAATGCA-TGACATATCAATTATTCCCGACAACA 477
consensus_1643#1      CCTGTTCAACAACTTCAACCTATTCCAAATGCAATGACATAT------------------ 303
                      * ***********  ****************** ********                  

consensus_1643#0      TCATCCATTACAATGCCAACACCAATGTTTAATCAAAATGTATCCAATTCTAATAATCTA 537
consensus_1643#1      ------------------------------------------------------------
                                                                                  

consensus_1643#0      ATAAAACCATTATCTAAATGTGAGATAGATGATTTATTAAGCTGACAATGAATTCA 593
consensus_1643#1      --------------------------------------------------------