These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1645#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [GAGTTGGGAAGTATAGAATCAGACGTTCGAAATTTCTTTGTGCGTTCTCAGTAATTACAAACCGATACAAGCAGCTAATCAATATATAAATAGAAGCAAATATAATGAGATCAAGCGAAATCAGTTTCAAAACACCTCCTCTCCATTTTAAGAGAAGGCGGAAAAATATTCCAGGACCTCCCGTAAGGACAAACTGATTGTACTGGACAGTCATCAATAAATTTTTCTTGCACGTTTTCACCAGAATATGATATCACTGAACGATCCCGAT] [+] EMBL CD061964 [GAGTTGGGAAGTATAGAATCAGACGTTCGAAATTTCTTTGTGCGTTCTCAGTAATTACAAACCGATACAAGCAGCTAATCAATATATAAATAGAAGCAAATATAATGAGATCAAGCGAAATCAGTTTCAAAACACCTCCTCTCCATTTTAAGAGAAGGCGGAAAAATATTCCAGGACCTCCCGTAAGGACAAACTGATTGTACTGGACAGTCATCAATAAATTTTTCTTGCACGTTTTCACCAGAATATGATATCACTGAACGATCCCGAT] consensusID : consensus_1645#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 101 fasta sequence [TATTTCCGCCTTCTCTGAAATGGAGAGGAGGTGTTTGAAACTGATTGTACTGGACAGTCATCAATAAATTTTTCTTGCACGTTTTCACCAGAATATGATAT] [+] EMBL CD061762 [TATTTCCGCCTTCTCTGAAATGGAGAGGAGGTGTTTGAAACTGATTGTACTGGACAGTCATCAATAAATTTTTCTTGCACGTTTTCACCAGAATATGATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1645#0 GAGTTGGGAAGTATAGAATCAGACGTTCGAAATTTCTTTGTGCGTTCTCAGTAATTACAA 60 consensus_1645#1 ------------------------------------------------------------ consensus_1645#0 ACCGATACAAGCAGCTAATCAATATATAAATAGAAGCAAATATAATGAGATCAAGCGAAA 120 consensus_1645#1 ------------------------------------------------------------ consensus_1645#0 TCAGTTTCAAAACACCTCCTCTCCATTTTAAGAGAAGGCGGAAAAATATTCCAGGACCTC 180 consensus_1645#1 ---------------TATTTCCGCCTTCTCTGAAATGGAGAGGAGGTGTTTGA------- 38 ** * ** * ** * ** * * * ** * consensus_1645#0 CCGTAAGGACAAACTGATTGTACTGGACAGTCATCAATAAATTTTTCTTGCACGTTTTCA 240 consensus_1645#1 -----------AACTGATTGTACTGGACAGTCATCAATAAATTTTTCTTGCACGTTTTCA 87 ************************************************* consensus_1645#0 CCAGAATATGATATCACTGAACGATCCCGAT 271 consensus_1645#1 CCAGAATATGATAT----------------- 101 ************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||