These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [GAGGGGATTCCAACAAATCTACAAATTATAGAGAATAAATTCTCAGAAACATCTGTATTGTCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTGAACCAACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGCGAAAGNTCGTAAAGATAAAATTTGGCTACGTCGTTCACAGCCTAGTCAACGTGAATATCGTATTTTAATTGCTGTAGACGATTCATCATCAATGTCTGAAAATCTTTGTAAACAAATGACTTTTGAATCATTGATAGAAGTAGGTCGAATAGGTGTTTGCAGTTTCGGTGAATCAGTACGTGTACTTCATGATTTAAAAGATCCATGGGTAACAGATGCTGGTCCACGTGTATTAAGTCAATTCACTTTTGGACAACCGAAAACATCACTTGATGAATTCAACTAGTTACATGAATTCTACCAATACTAATGCTATTCCTAGTCAATTATTACTTATTCTATCAGATGGTGTCTTCTCAGAAGATCCACAAAGTCCATCACTACAAGCTGCTGTTCGACTAGCACGTGATTCT] [+] EMBL CD081046 [GAGGGGATTCCAACAAATCTACAAATTATAGAGAATAAATTCTCAGAAACATCTGTATTGTCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTGAACCAACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGCGAAAGNTCGTAAAGATAAAATTTGGCTACGTCGTTCACAGCCTAGTCAACGTGAATATCGTATTTTAATTGCTGTAGACGATTCATCATCAATGTCTGAAAATCTTTGTAAACAAATGACTTTTGAATCATTGATAGAAGTAGGTCGAATAGGTGTTTGCAGTTTCGGTGAATCAGTACGTGTACTTCATGATTTAAAAGATCCATGGGTAACAGATGCTGGTCCACGTGTATTAAGTCAATTCACTTTTGGACAACCGAAAACATCACTTGATGAATTCAACTAGTTACATGAATTCTACCAATACTAATGCTATTCCTAGTCAATTATTACTTATTCTATCAGATGGTGTCTTCTCAGAAGATCCACAAAGTCCATCACTACAAGCTGCTGTTCGACTAGCACGTGATTCT] consensusID : consensus_1657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence [ATTGGCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTGAACCAACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGCGAAAGATTATTCCATATTTAGCTAGTCATTTTCGTAAAG] [+] EMBL CD077878 [ATTGGCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTGAACCAACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGCGAAAGATTATTCCATATTTAGCTAGTCATTTTCGTAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1657#0 GAGGGGATTCCAACAAATCTACAAATTATAGAGAATAAATTCTCAGAAACATCTGTATTG 60 consensus_1657#1 --------------------------------------------------------ATTG 4 **** consensus_1657#0 TCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTGAACC 120 consensus_1657#1 GCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTGAACC 64 *********************************************************** consensus_1657#0 AACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGCGAAA 180 consensus_1657#1 AACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGCGAAA 124 ************************************************************ consensus_1657#0 GNTCGTAAAGATAAAATTTGGCTACGTCGTTCACAGCCTAGTCAACGTGAATATCGTATT 240 consensus_1657#1 GATTATT----CCATATTTAGCTA-GTCATTTTC-GTAAAG------------------- 159 * * * * **** **** *** ** * * ** consensus_1657#0 TTAATTGCTGTAGACGATTCATCATCAATGTCTGAAAATCTTTGTAAACAAATGACTTTT 300 consensus_1657#1 ------------------------------------------------------------ consensus_1657#0 GAATCATTGATAGAAGTAGGTCGAATAGGTGTTTGCAGTTTCGGTGAATCAGTACGTGTA 360 consensus_1657#1 ------------------------------------------------------------ consensus_1657#0 CTTCATGATTTAAAAGATCCATGGGTAACAGATGCTGGTCCACGTGTATTAAGTCAATTC 420 consensus_1657#1 ------------------------------------------------------------ consensus_1657#0 ACTTTTGGACAACCGAAAACATCACTTGATGAATTCAACTAGTTACATGAATTCTACCAA 480 consensus_1657#1 ------------------------------------------------------------ consensus_1657#0 TACTAATGCTATTCCTAGTCAATTATTACTTATTCTATCAGATGGTGTCTTCTCAGAAGA 540 consensus_1657#1 ------------------------------------------------------------ consensus_1657#0 TCCACAAAGTCCATCACTACAAGCTGCTGTTCGACTAGCACGTGATTCT 589 consensus_1657#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||