cluster # 1657

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Schistosoma mansoni
cluster # 1657 cluster # 1657 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1657#0 length = 589 sequences # 1

consensus_1657#1 length = 159 sequences # 1

consensusID : consensus_1657#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [GAGGGGATTCCAACAAATCTACAAATTATAGAGAATAAATTCTCAGAAACATCTGTATTGTCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTGAACCAACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGCGAAAGNTCGTAAAGATAAAATTTGGCTACGTCGTTCACAGCCTAGTCAACGTGAATATCGTATTTTAATTGCTGTAGACGATTCATCATCAATGTCTGAAAATCTTTGTAAACAAATGACTTTTGAATCATTGATAGAAGTAGGTCGAATAGGTGTTTGCAGTTTCGGTGAATCAGTACGTGTACTTCATGATTTAAAAGATCCATGGGTAACAGATGCTGGTCCACGTGTATTAAGTCAATTCACTTTTGGACAACCGAAAACATCACTTGATGAATTCAACTAGTTACATGAATTCTACCAATACTAATGCTATTCCTAGTCAATTATTACTTATTCTATCAGATGGTGTCTTCTCAGAAGATCCACAAAGTCCATCACTACAAGCTGCTGTTCGACTAGCACGTGATTCT]

[+] EMBL CD081046             [GAGGGGATTCCAACAAATCTACAAATTATAGAGAATAAATTCTCAGAAACATCTGTATTGTCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTGAACCAACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGCGAAAGNTCGTAAAGATAAAATTTGGCTACGTCGTTCACAGCCTAGTCAACGTGAATATCGTATTTTAATTGCTGTAGACGATTCATCATCAATGTCTGAAAATCTTTGTAAACAAATGACTTTTGAATCATTGATAGAAGTAGGTCGAATAGGTGTTTGCAGTTTCGGTGAATCAGTACGTGTACTTCATGATTTAAAAGATCCATGGGTAACAGATGCTGGTCCACGTGTATTAAGTCAATTCACTTTTGGACAACCGAAAACATCACTTGATGAATTCAACTAGTTACATGAATTCTACCAATACTAATGCTATTCCTAGTCAATTATTACTTATTCTATCAGATGGTGTCTTCTCAGAAGATCCACAAAGTCCATCACTACAAGCTGCTGTTCGACTAGCACGTGATTCT]




>consensus_1657#0
GAGGGGATTCCAACAAATCTACAAATTATAGAGAATAAATTCTCAGAAACATCTGTATTG
TCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTGAACC
AACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGCGAAA
GNTCGTAAAGATAAAATTTGGCTACGTCGTTCACAGCCTAGTCAACGTGAATATCGTATT
TTAATTGCTGTAGACGATTCATCATCAATGTCTGAAAATCTTTGTAAACAAATGACTTTT
GAATCATTGATAGAAGTAGGTCGAATAGGTGTTTGCAGTTTCGGTGAATCAGTACGTGTA
CTTCATGATTTAAAAGATCCATGGGTAACAGATGCTGGTCCACGTGTATTAAGTCAATTC
ACTTTTGGACAACCGAAAACATCACTTGATGAATTCAACTAGTTACATGAATTCTACCAA
TACTAATGCTATTCCTAGTCAATTATTACTTATTCTATCAGATGGTGTCTTCTCAGAAGA
TCCACAAAGTCCATCACTACAAGCTGCTGTTCGACTAGCACGTGATTCT

consensusID : consensus_1657#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence

                              [ATTGGCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTGAACCAACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGCGAAAGATTATTCCATATTTAGCTAGTCATTTTCGTAAAG]

[+] EMBL CD077878             [ATTGGCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTGAACCAACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGCGAAAGATTATTCCATATTTAGCTAGTCATTTTCGTAAAG]




>consensus_1657#1
ATTGGCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTG
AACCAACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGC
GAAAGATTATTCCATATTTAGCTAGTCATTTTCGTAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1657#0      GAGGGGATTCCAACAAATCTACAAATTATAGAGAATAAATTCTCAGAAACATCTGTATTG 60
consensus_1657#1      --------------------------------------------------------ATTG 4
                                                                              ****

consensus_1657#0      TCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTGAACC 120
consensus_1657#1      GCAACGATCGAATAGTTTAGCACGTCAATTATGTGAAACACTTCGTTTAGTTCTTGAACC 64
                       ***********************************************************

consensus_1657#0      AACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGCGAAA 180
consensus_1657#1      AACTAAAGCTTCACGTTTACGTGGAGATTATCGAACAGGAAAACGTATCAATATGCGAAA 124
                      ************************************************************

consensus_1657#0      GNTCGTAAAGATAAAATTTGGCTACGTCGTTCACAGCCTAGTCAACGTGAATATCGTATT 240
consensus_1657#1      GATTATT----CCATATTTAGCTA-GTCATTTTC-GTAAAG------------------- 159
                      * *  *       * **** **** *** **  * *   **                   

consensus_1657#0      TTAATTGCTGTAGACGATTCATCATCAATGTCTGAAAATCTTTGTAAACAAATGACTTTT 300
consensus_1657#1      ------------------------------------------------------------
                                                                                  

consensus_1657#0      GAATCATTGATAGAAGTAGGTCGAATAGGTGTTTGCAGTTTCGGTGAATCAGTACGTGTA 360
consensus_1657#1      ------------------------------------------------------------
                                                                                  

consensus_1657#0      CTTCATGATTTAAAAGATCCATGGGTAACAGATGCTGGTCCACGTGTATTAAGTCAATTC 420
consensus_1657#1      ------------------------------------------------------------
                                                                                  

consensus_1657#0      ACTTTTGGACAACCGAAAACATCACTTGATGAATTCAACTAGTTACATGAATTCTACCAA 480
consensus_1657#1      ------------------------------------------------------------
                                                                                  

consensus_1657#0      TACTAATGCTATTCCTAGTCAATTATTACTTATTCTATCAGATGGTGTCTTCTCAGAAGA 540
consensus_1657#1      ------------------------------------------------------------
                                                                                  

consensus_1657#0      TCCACAAAGTCCATCACTACAAGCTGCTGTTCGACTAGCACGTGATTCT 589
consensus_1657#1      -------------------------------------------------