cluster # 1670

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Schistosoma mansoni
cluster # 1670 cluster # 1670 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1670#0 length = 479 sequences # 1

consensus_1670#1 length = 227 sequences # 1

consensusID : consensus_1670#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 479
fasta sequence

                              [AGTAGATGCCCAACTTAGAGATCAACAGGATGGATTCCGTAAGGATCGGTCGTGCATAAACCAAATTGCGACACTGCAGATCTTCGTTGAACAATCAGTTGGATGTAACTCATCACCATACATCAACTTCCCTGGCTATGACAAAGCGTTTGACAGTGTCGGTAGGAGGATCTTATGAGCTCTTCTTCCACACTATGGTGTGCCTCAGTAGATCGTTCACATTATATGGAATTCGTACGACGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACATCGTCTTTTCTCTTTCTTCTCGTGGTCAACTGAATTATGAAGAGCTAAACGCCTCGTGNTATACTATTAGGGAGAGCAANNTACCTGGGAAGTTTNATGACAAATATATGATCACTGAGGNNTATATAGGCGAAATACCACGGGTGNACAGAAATCCTTGNTCATG]

[+] EMBL CD182100             [AGTAGATGCCCAACTTAGAGATCAACAGGATGGATTCCGTAAGGATCGGTCGTGCATAAACCAAATTGCGACACTGCAGATCTTCGTTGAACAATCAGTTGGATGTAACTCATCACCATACATCAACTTCCCTGGCTATGACAAAGCGTTTGACAGTGTCGGTAGGAGGATCTTATGAGCTCTTCTTCCACACTATGGTGTGCCTCAGTAGATCGTTCACATTATATGGAATTCGTACGACGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACATCGTCTTTTCTCTTTCTTCTCGTGGTCAACTGAATTATGAAGAGCTAAACGCCTCGTGNTATACTATTAGGGAGAGCAANNTACCTGGGAAGTTTNATGACAAATATATGATCACTGAGGNNTATATAGGCGAAATACCACGGGTGNACAGAAATCCTTGNTCATG]




>consensus_1670#0
AGTAGATGCCCAACTTAGAGATCAACAGGATGGATTCCGTAAGGATCGGTCGTGCATAAA
CCAAATTGCGACACTGCAGATCTTCGTTGAACAATCAGTTGGATGTAACTCATCACCATA
CATCAACTTCCCTGGCTATGACAAAGCGTTTGACAGTGTCGGTAGGAGGATCTTATGAGC
TCTTCTTCCACACTATGGTGTGCCTCAGTAGATCGTTCACATTATATGGAATTCGTACGA
CGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGAC
CGGCTTCCTAACATCGTCTTTTCTCTTTCTTCTCGTGGTCAACTGAATTATGAAGAGCTA
AACGCCTCGTGNTATACTATTAGGGAGAGCAANNTACCTGGGAAGTTTNATGACAAATAT
ATGATCACTGAGGNNTATATAGGCGAAATACCACGGGTGNACAGAAATCCTTGNTCATG

consensusID : consensus_1670#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence

                              [ATGGTGTGCCTCAGTAGATCGTTCACATCATATGGAATTCGTACGACGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACATCGTCTTTTCTCTTTCTTGTCGTGGTCAACTGAATTATGAAGACCTTGACATCTGAGGGGAAGTATGGAATACAATAAACAGCTTGGATGCAGTTACACGAGTTGAAC]

[-] EMBL CD119194             [ATGGTGTGCCTCAGTAGATCGTTCACATCATATGGAATTCGTACGACGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACATCGTCTTTTCTCTTTCTTGTCGTGGTCAACTGAATTATGAAGACCTTGACATCTGAGGGGAAGTATGGAATACAATAAACAGCTTGGATGCAGTTACACGAGTTGAAC]




>consensus_1670#1
ATGGTGTGCCTCAGTAGATCGTTCACATCATATGGAATTCGTACGACGGACCACACTGCG
AAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGACCGGCTTCCTAACAT
CGTCTTTTCTCTTTCTTGTCGTGGTCAACTGAATTATGAAGACCTTGACATCTGAGGGGA
AGTATGGAATACAATAAACAGCTTGGATGCAGTTACACGAGTTGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1670#0      AGTAGATGCCCAACTTAGAGATCAACAGGATGGATTCCGTAAGGATCGGTCGTGCATAAA 60
consensus_1670#1      ------------------------------------------------------------
                                                                                  

consensus_1670#0      CCAAATTGCGACACTGCAGATCTTCGTTGAACAATCAGTTGGATGTAACTCATCACCATA 120
consensus_1670#1      ------------------------------------------------------------
                                                                                  

consensus_1670#0      CATCAACTTCCCTGGCTATGACAAAGCGTTTGACAGTGTCGGTAGGAGGATCTTATGAGC 180
consensus_1670#1      ------------------------------------------------------------
                                                                                  

consensus_1670#0      TCTTCTTCCACACTATGGTGTGCCTCAGTAGATCGTTCACATTATATGGAATTCGTACGA 240
consensus_1670#1      --------------ATGGTGTGCCTCAGTAGATCGTTCACATCATATGGAATTCGTACGA 46
                                    **************************** *****************

consensus_1670#0      CGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGAC 300
consensus_1670#1      CGGACCACACTGCGAAGTGGTGCACAGATGACAGCTGACAGATGCATTTCGAGTGAGGAC 106
                      ************************************************************

consensus_1670#0      CGGCTTCCTAACATCGTCTTTTCTCTTTCTTCTCGTGGTCAACTGAATTATGAAGAGCTA 360
consensus_1670#1      CGGCTTCCTAACATCGTCTTTTCTCTTTCTTGTCGTGGTCAACTGAATTATGAAGACCTT 166
                      ******************************* ************************ ** 

consensus_1670#0      AACGCCTCGTGNTATACTATTAGGGAGAGCAANNTACCTGGGAAGTTTNATGACAAATAT 420
consensus_1670#1      GACATCTGAGGGGA-AGTATGGAATACAATAAACAGCTTGGATGCAGTTACACGAGTTGA 225
                       **  **   *  * * ***     * *  **    * ***      * *    *  *  

consensus_1670#0      ATGATCACTGAGGNNTATATAGGCGAAATACCACGGGTGNACAGAAATCCTTGNTCATG 479
consensus_1670#1      AC--------------------------------------------------------- 227
                      *