cluster # 1673

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Schistosoma mansoni
cluster # 1673 cluster # 1673 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1673#0 length = 312 sequences # 1

consensus_1673#1 length = 277 sequences # 1

consensusID : consensus_1673#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [GTCCGAATGATTTATTCANCAAATCCCTGATCCATTTCTATTGTGGTNCATNGGGNGGNAATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATGTAACACCANGTTCATGANGCCATGAAANCCANCTTGGTGGAGATAATGTAAGTTCATGAAATCCATCTNGAAAACGACGAATNCTGTNTAAACCTATACCAAGTNTTNCTTTCCCTCGAAGGTGGTATNTGTTTTCCATTGGTCAATTGGGGTTGGTCTTTCCTCCAANTATTCCAANCAGGCCCTAAGGAANNATTTTTTTTCAANTNN]

[+] EMBL SM374                [GTCCGAATGATTTATTCANCAAATCCCTGATCCATTTCTATTGTGGTNCATNGGGNGGNAATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATGTAACACCANGTTCATGANGCCATGAAANCCANCTTGGTGGAGATAATGTAAGTTCATGAAATCCATCTNGAAAACGACGAATNCTGTNTAAACCTATACCAAGTNTTNCTTTCCCTCGAAGGTGGTATNTGTTTTCCATTGGTCAATTGGGGTTGGTCTTTCCTCCAANTATTCCAANCAGGCCCTAAGGAANNATTTTTTTTCAANTNN]




>consensus_1673#0
GTCCGAATGATTTATTCANCAAATCCCTGATCCATTTCTATTGTGGTNCATNGGGNGGNA
ATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATGTAACACCANGTTCATGAN
GCCATGAAANCCANCTTGGTGGAGATAATGTAAGTTCATGAAATCCATCTNGAAAACGAC
GAATNCTGTNTAAACCTATACCAAGTNTTNCTTTCCCTCGAAGGTGGTATNTGTTTTCCA
TTGGTCAATTGGGGTTGGTCTTTCCTCCAANTATTCCAANCAGGCCCTAAGGAANNATTT
TTTTTCAANTNN

consensusID : consensus_1673#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [TACAACCTATTGATTGAAGTCCGNATGATTCATTCATCAAATCCCTGATCCATTTCTATTGNNGTTCATTTTGAGGNAATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATGTAACACCATGTTCATGCAAGCCATGCAANACCAACTNTGTTGGAGATAATGTAAGTNCATGAAATCCATCTTGGAAAACGACGCAATTCTGTATAAACCTATACCAAGTATTTCTTCNTCTCGAAGTTGGTATNTGTNTCCATTGNTAAATTGGGTA]

[+] EMBL SM6501               [TACAACCTATTGATTGAAGTCCGNATGATTCATTCATCAAATCCCTGATCCATTTCTATTGNNGTTCATTTTGAGGNAATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATGTAACACCATGTTCATGCAAGCCATGCAANACCAACTNTGTTGGAGATAATGTAAGTNCATGAAATCCATCTTGGAAAACGACGCAATTCTGTATAAACCTATACCAAGTATTTCTTCNTCTCGAAGTTGGTATNTGTNTCCATTGNTAAATTGGGTA]




>consensus_1673#1
TACAACCTATTGATTGAAGTCCGNATGATTCATTCATCAAATCCCTGATCCATTTCTATT
GNNGTTCATTTTGAGGNAATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATG
TAACACCATGTTCATGCAAGCCATGCAANACCAACTNTGTTGGAGATAATGTAAGTNCAT
GAAATCCATCTTGGAAAACGACGCAATTCTGTATAAACCTATACCAAGTATTTCTTCNTC
TCGAAGTTGGTATNTGTNTCCATTGNTAAATTGGGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1673#0      ------------------GTCCGAATGATTTATTCANCAAATCCCTGATCCATTTCTATT 42
consensus_1673#1      TACAACCTATTGATTGAAGTCCGNATGATTCATTCATCAAATCCCTGATCCATTTCTATT 60
                                        ***** ****** ***** ***********************

consensus_1673#0      GTGGTNCATNGGGNGGNAATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATG 102
consensus_1673#1      GNNGTTCATTTTGAGGNAATCGACCAGGAATTCCGAAAATATGTCTATACTCTCCTGATG 120
                      *  ** ***   * **********************************************

consensus_1673#0      TAACACCANGTTCATG-ANGCCATG--AAANCCANCTTGGTGGAGATAATGTAAGTTCAT 159
consensus_1673#1      TAACACCATGTTCATGCAAGCCATGCAANACCAACTNTGTTGGAGATAATGTAAGTNCAT 180
                      ******** ******* * ******  * * * *   ** **************** ***

consensus_1673#0      GAAATCCATCTNG-AAAACGACG-AATNCTGTNTAAACCTATACCAAGTNTTNCTTTCCC 217
consensus_1673#1      GAAATCCATCTTGGAAAACGACGCAATTCTGTATAAACCTATACCAAGTATTTCTTCNTC 240
                      *********** * ********* *** **** **************** ** ***   *

consensus_1673#0      TCGAAGGTGGTATNTGTTTTCCATTGGTCAATTGGGGTTGGTCTTTCCTCCAANTATTCC 277
consensus_1673#1      TCGAAGTTGGTATNTGTNT-CCATTGNTAAATTGGGTA---------------------- 277
                      ****** ********** * ****** * *******                        

consensus_1673#0      AANCAGGCCCTAAGGAANNATTTTTTTTCAANTNN 312
consensus_1673#1      -----------------------------------