cluster # 1684

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Schistosoma mansoni
cluster # 1684 cluster # 1684 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1684#0 length = 492 sequences # 1

consensus_1684#1 length = 422 sequences # 1

consensusID : consensus_1684#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [TGGAAGGACCTTGAGGTATGTGCGTGCTTCAAAGTAAAATGTGCTTTGCGCGTTACAAGTGACTACCTGGAGATATGAACGTGTTAATGGATAATACCAACTACCGTAACGAAACTAGCAATTGTGGTATTGTAAGTGCCACTTCGACCTCCGAAGATGATCAGCTGAGTTTATGTTGTCTGTGTGGTCAAACGTTTCCAAGCATCAAGTCCCTCCATATTCACATTAATGTTGTACACGAAGAAGTGGCAGACTCTTTTGATTTTCACTTAACTGATGGTGAAAACGACGACTCTCATTCAGTTACCTTAGGATCGCGGATCTCACTGTCATCTAGTAGTGAGGAATTTATATCTAAGCCTGAAACTCCAGTTGTTTGTCCTAATTGTAAAAAGTCGTTTCCTGGTCTCACAAGTTTGCGAGTTCATATAGATTCTGTACATCATGGTAATCGGATACCTCAATGTGATTATTGCATGAAAAAGTTCTCCA]

[+] EMBL CD178749             [TGGAAGGACCTTGAGGTATGTGCGTGCTTCAAAGTAAAATGTGCTTTGCGCGTTACAAGTGACTACCTGGAGATATGAACGTGTTAATGGATAATACCAACTACCGTAACGAAACTAGCAATTGTGGTATTGTAAGTGCCACTTCGACCTCCGAAGATGATCAGCTGAGTTTATGTTGTCTGTGTGGTCAAACGTTTCCAAGCATCAAGTCCCTCCATATTCACATTAATGTTGTACACGAAGAAGTGGCAGACTCTTTTGATTTTCACTTAACTGATGGTGAAAACGACGACTCTCATTCAGTTACCTTAGGATCGCGGATCTCACTGTCATCTAGTAGTGAGGAATTTATATCTAAGCCTGAAACTCCAGTTGTTTGTCCTAATTGTAAAAAGTCGTTTCCTGGTCTCACAAGTTTGCGAGTTCATATAGATTCTGTACATCATGGTAATCGGATACCTCAATGTGATTATTGCATGAAAAAGTTCTCCA]




>consensus_1684#0
TGGAAGGACCTTGAGGTATGTGCGTGCTTCAAAGTAAAATGTGCTTTGCGCGTTACAAGT
GACTACCTGGAGATATGAACGTGTTAATGGATAATACCAACTACCGTAACGAAACTAGCA
ATTGTGGTATTGTAAGTGCCACTTCGACCTCCGAAGATGATCAGCTGAGTTTATGTTGTC
TGTGTGGTCAAACGTTTCCAAGCATCAAGTCCCTCCATATTCACATTAATGTTGTACACG
AAGAAGTGGCAGACTCTTTTGATTTTCACTTAACTGATGGTGAAAACGACGACTCTCATT
CAGTTACCTTAGGATCGCGGATCTCACTGTCATCTAGTAGTGAGGAATTTATATCTAAGC
CTGAAACTCCAGTTGTTTGTCCTAATTGTAAAAAGTCGTTTCCTGGTCTCACAAGTTTGC
GAGTTCATATAGATTCTGTACATCATGGTAATCGGATACCTCAATGTGATTATTGCATGA
AAAAGTTCTCCA

consensusID : consensus_1684#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [TTCTTATAGAAGTGGCAGACTCTTTTGATTTTCACTTAACTGATGGTGAAAACGACGACTCTCATTCAGTAAGTTAAGACTATTGGAATATTTTTGGAGAGATTGTGAAAATATGTACTTTCTTCTGCATCTCAAAAAAGGACTAGTTTTTACTATTTGTTATATGTCTTTAACGTAATCTCTTTTCAAATTTCACTCGACCAAATATGGTGATTATCGAACCAAAGTCCTATAATAACTTGAGAGATGCTAGAATTCTAATCCATCTATTTTTATTAGTTTTATGATACGTCATATATACTGGGATGTGTTAATCGTAATGAAATAACCGGACTCATACGTATTACTTATAATAAATGACACGAATATGAAATGGTAATCACGTTTAAACGACAAGAAGTTATGTTTATTAATCCCATTGT]

[+] EMBL CD131740             [TTCTTATAGAAGTGGCAGACTCTTTTGATTTTCACTTAACTGATGGTGAAAACGACGACTCTCATTCAGTAAGTTAAGACTATTGGAATATTTTTGGAGAGATTGTGAAAATATGTACTTTCTTCTGCATCTCAAAAAAGGACTAGTTTTTACTATTTGTTATATGTCTTTAACGTAATCTCTTTTCAAATTTCACTCGACCAAATATGGTGATTATCGAACCAAAGTCCTATAATAACTTGAGAGATGCTAGAATTCTAATCCATCTATTTTTATTAGTTTTATGATACGTCATATATACTGGGATGTGTTAATCGTAATGAAATAACCGGACTCATACGTATTACTTATAATAAATGACACGAATATGAAATGGTAATCACGTTTAAACGACAAGAAGTTATGTTTATTAATCCCATTGT]




>consensus_1684#1
TTCTTATAGAAGTGGCAGACTCTTTTGATTTTCACTTAACTGATGGTGAAAACGACGACT
CTCATTCAGTAAGTTAAGACTATTGGAATATTTTTGGAGAGATTGTGAAAATATGTACTT
TCTTCTGCATCTCAAAAAAGGACTAGTTTTTACTATTTGTTATATGTCTTTAACGTAATC
TCTTTTCAAATTTCACTCGACCAAATATGGTGATTATCGAACCAAAGTCCTATAATAACT
TGAGAGATGCTAGAATTCTAATCCATCTATTTTTATTAGTTTTATGATACGTCATATATA
CTGGGATGTGTTAATCGTAATGAAATAACCGGACTCATACGTATTACTTATAATAAATGA
CACGAATATGAAATGGTAATCACGTTTAAACGACAAGAAGTTATGTTTATTAATCCCATT
GT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1684#0      TGGAAGGACCTTGAGGTATGTGCGTGCTTCAAAGTAAAATGTGCTTTGCGCGTTACAAGT 60
consensus_1684#1      ----------------------TTCTTATAGAAGTGGCAGACTCTTT-TGATTTTCACTT 37
                                                  *  ****   *    ****  *  ** **  *

consensus_1684#0      GACTACCTGGAGATATGAACGTGTTAATGGATAATACCAA--CTACCGTAACGAAACT-- 116
consensus_1684#1      AACTGATGGTGAAAACGACGACTCTCATTCAGTAAGTTAAGACTATTGGAATATTTTTGG 97
                       ***    *   * * **      * **  *  *    **  ***  * **      *  

consensus_1684#0      AGCAATTGTGGTATTGTAAGTGCCACTTCG-ACCTCCGAAGATGATCAGCTGAGTTTATG 175
consensus_1684#1      AGAGATTGTGAAAATATGTACTTTCTTCTGCATCTCAAAAAAGGACTAGTTTTTACTATT 157
                      **  ******  * * *         *  * * ***  ** * **  ** *     *** 

consensus_1684#0      TTGTCTGTGTGGTCAAACGTTTCCAAGCATCAAGTCCCTCCATATTCACATTAATGTTGT 235
consensus_1684#1      TGTTATATGTCTTTAA-CGTAATCTCTTTTCAAATTTC-----ACTCGACCAAATATGGT 211
                      *  * * ***  * ** ***   *     **** *  *     * **     *** * **

consensus_1684#0      ACACGAAGAAGTGGCAGACTCTTTTGATTTTCACTTAACTGATGGTGAAAACGACGACTC 295
consensus_1684#1      GATTATCGAAC---CAAAGTCCTATAATA---ACTTGAGAGATGCTAGAATT--CTAATC 263
                             ***    ** * ** * * **    **** *  **** *  **    * * **

consensus_1684#0      TCATTCAGTTACCTTAGGATCGCGGATCTCACTGTCATCTAGTAGTGAGGAATTTATATC 355
consensus_1684#1      -CATCTATTTTTATTAGTTTTATGATAC-----GTCATATA-TACTGGGATGTGTTAATC 316
                       ***  * **   ****  *   *   *     ***** ** ** ** *   * *  ***

consensus_1684#0      TAAGCCTGA-AACTCCAGTTGTTTGTCCTAATTGTAAAAAGTCGTTTCCTGGTCTCACAA 414
consensus_1684#1      GTAATGAAATAACCGGACTCATACGTATTACTTATAATAAATGA-----------CACGA 365
                        *     * ***   * *  *  **  ** ** *** ** *             *** *

consensus_1684#0      GTTTGCGAGTTCATATAGATTCTGTACATCATGGTAATCGGATACCTCAATGTGATTATT 474
consensus_1684#1      ATATG-AAATGGTAATCACGTTTAAACGACA-AGAAGTTATGTTTATTAATCCCATTGT- 422
                       * **  * *    **    * *  **  **  * * *    *   * ***   *** * 

consensus_1684#0      GCATGAAAAAGTTCTCCA 492
consensus_1684#1      ------------------