cluster # 1693

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Schistosoma mansoni
cluster # 1693 cluster # 1693 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1693#0 length = 461 sequences # 1

consensus_1693#1 length = 227 sequences # 1

consensusID : consensus_1693#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [CGTGGAATGAAAAAGATGGCAATCTCTCTGAAGAATGGATAGAATTGCGTAACGGTTGCTTATGCTGTTCTTTGAAAGATGCAAGCGTACGGGCCATTGAAAATTTAATGAAGCGGAGGGGGAAATTTGATTATATTCTAATTGAGACATCTGGACTTGCTGATCCAGGTTATTTGTGTTCTTGAAAGGTGATCTTCCCAACTATCCAGGTCCTGTTGCATCACTCTTCTGGTTAGACGAAGATTTATGTAGTCAAATTTGTCTCGATGGGATCGTGACAATTTTGGATTCCAAGCACTGTTTGTCACACCTTATGAAATCTACTGGGGATGAGATGAGCGAATATGAAAGGTTCTTAAATATATTTCACATTAATTTTTATTCCAGACAGGTACTTTTAGCTGATGTACTCATTGTCAACAAAACTGACTTGATTTCTGATTCGGAAAAATCAGAAGTGG]

[+] EMBL CD195256             [CGTGGAATGAAAAAGATGGCAATCTCTCTGAAGAATGGATAGAATTGCGTAACGGTTGCTTATGCTGTTCTTTGAAAGATGCAAGCGTACGGGCCATTGAAAATTTAATGAAGCGGAGGGGGAAATTTGATTATATTCTAATTGAGACATCTGGACTTGCTGATCCAGGTTATTTGTGTTCTTGAAAGGTGATCTTCCCAACTATCCAGGTCCTGTTGCATCACTCTTCTGGTTAGACGAAGATTTATGTAGTCAAATTTGTCTCGATGGGATCGTGACAATTTTGGATTCCAAGCACTGTTTGTCACACCTTATGAAATCTACTGGGGATGAGATGAGCGAATATGAAAGGTTCTTAAATATATTTCACATTAATTTTTATTCCAGACAGGTACTTTTAGCTGATGTACTCATTGTCAACAAAACTGACTTGATTTCTGATTCGGAAAAATCAGAAGTGG]




>consensus_1693#0
CGTGGAATGAAAAAGATGGCAATCTCTCTGAAGAATGGATAGAATTGCGTAACGGTTGCT
TATGCTGTTCTTTGAAAGATGCAAGCGTACGGGCCATTGAAAATTTAATGAAGCGGAGGG
GGAAATTTGATTATATTCTAATTGAGACATCTGGACTTGCTGATCCAGGTTATTTGTGTT
CTTGAAAGGTGATCTTCCCAACTATCCAGGTCCTGTTGCATCACTCTTCTGGTTAGACGA
AGATTTATGTAGTCAAATTTGTCTCGATGGGATCGTGACAATTTTGGATTCCAAGCACTG
TTTGTCACACCTTATGAAATCTACTGGGGATGAGATGAGCGAATATGAAAGGTTCTTAAA
TATATTTCACATTAATTTTTATTCCAGACAGGTACTTTTAGCTGATGTACTCATTGTCAA
CAAAACTGACTTGATTTCTGATTCGGAAAAATCAGAAGTGG

consensusID : consensus_1693#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence

                              [GAGACATCTGGACTTGCTGATCCAGGTCCTGTTGCATCACTCTTCTGGTTAGACGAAGATTTATGTAGTCAAATTTGTCTCGATGGGATCGTGACAATTTTGGATTCCAAGCACTGTTTGTCACACCTTATGAAATCTACTGGGGATGAGATGAGCGAATATGAAAGACAGGTACTTTTAGCTGATGTACTCATTGTCAACAAAACTGACTTTGATTTCTGATTCGG]

[+] EMBL CD078057             [GAGACATCTGGACTTGCTGATCCAGGTCCTGTTGCATCACTCTTCTGGTTAGACGAAGATTTATGTAGTCAAATTTGTCTCGATGGGATCGTGACAATTTTGGATTCCAAGCACTGTTTGTCACACCTTATGAAATCTACTGGGGATGAGATGAGCGAATATGAAAGACAGGTACTTTTAGCTGATGTACTCATTGTCAACAAAACTGACTTTGATTTCTGATTCGG]




>consensus_1693#1
GAGACATCTGGACTTGCTGATCCAGGTCCTGTTGCATCACTCTTCTGGTTAGACGAAGAT
TTATGTAGTCAAATTTGTCTCGATGGGATCGTGACAATTTTGGATTCCAAGCACTGTTTG
TCACACCTTATGAAATCTACTGGGGATGAGATGAGCGAATATGAAAGACAGGTACTTTTA
GCTGATGTACTCATTGTCAACAAAACTGACTTTGATTTCTGATTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1693#0      CGTGGAATGAAAAAGATGGCAATCTCTCTGAAGAATGGATAGAATTGCGTAACGGTTGCT 60
consensus_1693#1      ------------------------------------------------------------
                                                                                  

consensus_1693#0      TATGCTGTTCTTTGAAAGATGCAAGCGTACGGGCCATTGAAAATTTAATGAAGCGGAGGG 120
consensus_1693#1      ------------------------------------------------------------
                                                                                  

consensus_1693#0      GGAAATTTGATTATATTCTAATTGAGACATCTGGACTTGCTGATCCAGGTTATTTGTGTT 180
consensus_1693#1      ------------------------------------------------------------
                                                                                  

consensus_1693#0      CTTGAAAGGTGATCTTCCCAACTATCCAGGTCCTGTTGCATCACTCTTCTGGTTAGACGA 240
consensus_1693#1      -GAGACATCTGGACTTGCTGA---TCCAGGTCCTGTTGCATCACTCTTCTGGTTAGACGA 56
                         ** *  **  *** *  *   ************************************

consensus_1693#0      AGATTTATGTAGTCAAATTTGTCTCGATGGGATCGTGACAATTTTGGATTCCAAGCACTG 300
consensus_1693#1      AGATTTATGTAGTCAAATTTGTCTCGATGGGATCGTGACAATTTTGGATTCCAAGCACTG 116
                      ************************************************************

consensus_1693#0      TTTGTCACACCTTATGAAATCTACTGGGGATGAGATGAGCGAATATGAAAGGTTCTTAAA 360
consensus_1693#1      TTTGTCACACCTTATGAAATCTACTGGGGATGAGATGAGCGAATATGAAAG--------- 167
                      ***************************************************         

consensus_1693#0      TATATTTCACATTAATTTTTATTCCAGACAGGTACTTTTAGCTGATGTACTCATTGTCAA 420
consensus_1693#1      ---------------------------ACAGGTACTTTTAGCTGATGTACTCATTGTCAA 200
                                                 *********************************

consensus_1693#0      CAAAACTGACTT-GATTTCTGATTCGGAAAAATCAGAAGTGG 461
consensus_1693#1      CAAAACTGACTTTGATTTCTGATTCGG--------------- 227
                      ************ **************