cluster # 1696

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Schistosoma mansoni
cluster # 1696 cluster # 1696 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1696#0 length = 171 sequences # 1

consensus_1696#1 length = 124 sequences # 1

consensusID : consensus_1696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 171
fasta sequence

                              [GCCAACATCCGAGCCGAAGCGCGTTCCTCGGTCCCGGGAGGTCGCATGACACCCGAGGCTATAAGTCTACCCCCGAAGGAGTAGATACATTCCTCGGGCCTTTAACCGACCCCCAGAACTGATGTTGGCCTGGACACGGCGGAGTAACCCAACCAAAAGGAAGGGGGAACC]

[+] EMBL CD163845             [GCCAACATCCGAGCCGAAGCGCGTTCCTCGGTCCCGGGAGGTCGCATGACACCCGAGGCTATAAGTCTACCCCCGAAGGAGTAGATACATTCCTCGGGCCTTTAACCGACCCCCAGAACTGATGTTGGCCTGGACACGGCGGAGTAACCCAACCAAAAGGAAGGGGGAACC]




>consensus_1696#0
GCCAACATCCGAGCCGAAGCGCGTTCCTCGGTCCCGGGAGGTCGCATGACACCCGAGGCT
ATAAGTCTACCCCCGAAGGAGTAGATACATTCCTCGGGCCTTTAACCGACCCCCAGAACT
GATGTTGGCCTGGACACGGCGGAGTAACCCAACCAAAAGGAAGGGGGAACC

consensusID : consensus_1696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 124
fasta sequence

                              [GCCAACATCCGAGCCGAAGCGCGTTCCTCGGTCCCGGGAGGTCGCATGACACCCGAGGCTATAAGTCTACCCGGGAGAGGAGTACATACATTCCTCGGGCCTTTAACCGACCCTTTTAACCGAT]

[+] EMBL CD164008             [GCCAACATCCGAGCCGAAGCGCGTTCCTCGGTCCCGGGAGGTCGCATGACACCCGAGGCTATAAGTCTACCCGGGAGAGGAGTACATACATTCCTCGGGCCTTTAACCGACCCTTTTAACCGAT]




>consensus_1696#1
GCCAACATCCGAGCCGAAGCGCGTTCCTCGGTCCCGGGAGGTCGCATGACACCCGAGGCT
ATAAGTCTACCCGGGAGAGGAGTACATACATTCCTCGGGCCTTTAACCGACCCTTTTAAC
CGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1696#0      GCCAACATCCGAGCCGAAGCGCGTTCCTCGGTCCCGGGAGGTCGCATGACACCCGAGGCT 60
consensus_1696#1      GCCAACATCCGAGCCGAAGCGCGTTCCTCGGTCCCGGGAGGTCGCATGACACCCGAGGCT 60
                      ************************************************************

consensus_1696#0      ATAAGTCTACCCCCGA-AGGAGTAGATACATTCCTCGGGCCTTTAACCGACCCCCAGAAC 119
consensus_1696#1      ATAAGTCTACCCGGGAGAGGAGTACATACATTCCTCGGGCCTTTAACCGACCCTTTTAAC 120
                      ************  ** ******* ****************************    ***

consensus_1696#0      TGATGTTGGCCTGGACACGGCGGAGTAACCCAACCAAAAGGAAGGGGGAACC 171
consensus_1696#1      CGAT------------------------------------------------ 124
                       ***