cluster # 1703

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Schistosoma mansoni
cluster # 1703 cluster # 1703 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1703#0 length = 435 sequences # 1

consensus_1703#1 length = 211 sequences # 1

consensusID : consensus_1703#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [CAATTTTCTACCATATTTACTTTGTGAGATTGTGAAAACTCCACTCCACCCGTTGGAAAGATCCAATTCATTGCTTGCACATTTTACGATCTACTTTAAGCCTTCCAATGAGAAACTCCATGTATCAGTGGAATAAACAAAATACTTCTACACCAGAACAACTGATTAATTTTGAAAACTTTCAGTATTATGGTGAGATATCAGTGGGAACTCCACCTCAAAAGCTACGAGTGTTATTCGATACAGAATCAACTGACACTTGGTTCGCTTCAAGGAATTGTTGGTTTCTTGATATATTTTGTTGGATGTTTCGGTTGTACGATAGTTCGAAATCATCGACTTATGTAGCAGATGGTTCTAGTTTTCAAGTGAGATATCTGGATAGTGATATCTCTGGATTTTGGAGTGTAGACACTATAAGATAGATCGTTGTGN]

[+] EMBL BF440111             [CAATTTTCTACCATATTTACTTTGTGAGATTGTGAAAACTCCACTCCACCCGTTGGAAAGATCCAATTCATTGCTTGCACATTTTACGATCTACTTTAAGCCTTCCAATGAGAAACTCCATGTATCAGTGGAATAAACAAAATACTTCTACACCAGAACAACTGATTAATTTTGAAAACTTTCAGTATTATGGTGAGATATCAGTGGGAACTCCACCTCAAAAGCTACGAGTGTTATTCGATACAGAATCAACTGACACTTGGTTCGCTTCAAGGAATTGTTGGTTTCTTGATATATTTTGTTGGATGTTTCGGTTGTACGATAGTTCGAAATCATCGACTTATGTAGCAGATGGTTCTAGTTTTCAAGTGAGATATCTGGATAGTGATATCTCTGGATTTTGGAGTGTAGACACTATAAGATAGATCGTTGTGN]




>consensus_1703#0
CAATTTTCTACCATATTTACTTTGTGAGATTGTGAAAACTCCACTCCACCCGTTGGAAAG
ATCCAATTCATTGCTTGCACATTTTACGATCTACTTTAAGCCTTCCAATGAGAAACTCCA
TGTATCAGTGGAATAAACAAAATACTTCTACACCAGAACAACTGATTAATTTTGAAAACT
TTCAGTATTATGGTGAGATATCAGTGGGAACTCCACCTCAAAAGCTACGAGTGTTATTCG
ATACAGAATCAACTGACACTTGGTTCGCTTCAAGGAATTGTTGGTTTCTTGATATATTTT
GTTGGATGTTTCGGTTGTACGATAGTTCGAAATCATCGACTTATGTAGCAGATGGTTCTA
GTTTTCAAGTGAGATATCTGGATAGTGATATCTCTGGATTTTGGAGTGTAGACACTATAA
GATAGATCGTTGTGN

consensusID : consensus_1703#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence

                              [GAGGCCAGGATTCGGCACGAGGCGCATTTCAATGATTCCATTCATCATTGTCAATTTTCTACCATATTTACTTGGTGAGATTGTGAAAATTCCACTCCACCCGTTGGAAAGATCCGATTCATTGCTTTCATATTATACGAGTTACTTTAGGCCTTCGAAGAAAATATACATGTATCAATGGAATAACCGAAATACATCTACACCAGAACAA]

[+] EMBL CD078122             [GAGGCCAGGATTCGGCACGAGGCGCATTTCAATGATTCCATTCATCATTGTCAATTTTCTACCATATTTACTTGGTGAGATTGTGAAAATTCCACTCCACCCGTTGGAAAGATCCGATTCATTGCTTTCATATTATACGAGTTACTTTAGGCCTTCGAAGAAAATATACATGTATCAATGGAATAACCGAAATACATCTACACCAGAACAA]




>consensus_1703#1
GAGGCCAGGATTCGGCACGAGGCGCATTTCAATGATTCCATTCATCATTGTCAATTTTCT
ACCATATTTACTTGGTGAGATTGTGAAAATTCCACTCCACCCGTTGGAAAGATCCGATTC
ATTGCTTTCATATTATACGAGTTACTTTAGGCCTTCGAAGAAAATATACATGTATCAATG
GAATAACCGAAATACATCTACACCAGAACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1703#0      ---------------------------------------------------CAATTTTCT 9
consensus_1703#1      GAGGCCAGGATTCGGCACGAGGCGCATTTCAATGATTCCATTCATCATTGTCAATTTTCT 60
                                                                         *********

consensus_1703#0      ACCATATTTACTTTGTGAGATTGTGAAAACTCCACTCCACCCGTTGGAAAGATCCAATTC 69
consensus_1703#1      ACCATATTTACTTGGTGAGATTGTGAAAATTCCACTCCACCCGTTGGAAAGATCCGATTC 120
                      ************* *************** ************************* ****

consensus_1703#0      ATTGCTTGCACATTTTACGATCTACTTTAAGCCTTCCAATGAGAAACTCCATGTATCAGT 129
consensus_1703#1      ATTGCTTTCATATTATACGAGTTACTTTAGGCCTTCGAA-GAAAATATACATGTATCAAT 179
                      ******* ** *** *****  ******* ****** ** ** **  * ********* *

consensus_1703#0      GGAATAAACAAAATACTTCTACACCAGAACAACTGATTAATTTTGAAAACTTTCAGTATT 189
consensus_1703#1      GGAATAACCGAAATACATCTACACCAGAACAA---------------------------- 211
                      ******* * ****** ***************                            

consensus_1703#0      ATGGTGAGATATCAGTGGGAACTCCACCTCAAAAGCTACGAGTGTTATTCGATACAGAAT 249
consensus_1703#1      ------------------------------------------------------------
                                                                                  

consensus_1703#0      CAACTGACACTTGGTTCGCTTCAAGGAATTGTTGGTTTCTTGATATATTTTGTTGGATGT 309
consensus_1703#1      ------------------------------------------------------------
                                                                                  

consensus_1703#0      TTCGGTTGTACGATAGTTCGAAATCATCGACTTATGTAGCAGATGGTTCTAGTTTTCAAG 369
consensus_1703#1      ------------------------------------------------------------
                                                                                  

consensus_1703#0      TGAGATATCTGGATAGTGATATCTCTGGATTTTGGAGTGTAGACACTATAAGATAGATCG 429
consensus_1703#1      ------------------------------------------------------------
                                                                                  

consensus_1703#0      TTGTGN 435
consensus_1703#1      ------