These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [CAATTTTCTACCATATTTACTTTGTGAGATTGTGAAAACTCCACTCCACCCGTTGGAAAGATCCAATTCATTGCTTGCACATTTTACGATCTACTTTAAGCCTTCCAATGAGAAACTCCATGTATCAGTGGAATAAACAAAATACTTCTACACCAGAACAACTGATTAATTTTGAAAACTTTCAGTATTATGGTGAGATATCAGTGGGAACTCCACCTCAAAAGCTACGAGTGTTATTCGATACAGAATCAACTGACACTTGGTTCGCTTCAAGGAATTGTTGGTTTCTTGATATATTTTGTTGGATGTTTCGGTTGTACGATAGTTCGAAATCATCGACTTATGTAGCAGATGGTTCTAGTTTTCAAGTGAGATATCTGGATAGTGATATCTCTGGATTTTGGAGTGTAGACACTATAAGATAGATCGTTGTGN] [+] EMBL BF440111 [CAATTTTCTACCATATTTACTTTGTGAGATTGTGAAAACTCCACTCCACCCGTTGGAAAGATCCAATTCATTGCTTGCACATTTTACGATCTACTTTAAGCCTTCCAATGAGAAACTCCATGTATCAGTGGAATAAACAAAATACTTCTACACCAGAACAACTGATTAATTTTGAAAACTTTCAGTATTATGGTGAGATATCAGTGGGAACTCCACCTCAAAAGCTACGAGTGTTATTCGATACAGAATCAACTGACACTTGGTTCGCTTCAAGGAATTGTTGGTTTCTTGATATATTTTGTTGGATGTTTCGGTTGTACGATAGTTCGAAATCATCGACTTATGTAGCAGATGGTTCTAGTTTTCAAGTGAGATATCTGGATAGTGATATCTCTGGATTTTGGAGTGTAGACACTATAAGATAGATCGTTGTGN] consensusID : consensus_1703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence [GAGGCCAGGATTCGGCACGAGGCGCATTTCAATGATTCCATTCATCATTGTCAATTTTCTACCATATTTACTTGGTGAGATTGTGAAAATTCCACTCCACCCGTTGGAAAGATCCGATTCATTGCTTTCATATTATACGAGTTACTTTAGGCCTTCGAAGAAAATATACATGTATCAATGGAATAACCGAAATACATCTACACCAGAACAA] [+] EMBL CD078122 [GAGGCCAGGATTCGGCACGAGGCGCATTTCAATGATTCCATTCATCATTGTCAATTTTCTACCATATTTACTTGGTGAGATTGTGAAAATTCCACTCCACCCGTTGGAAAGATCCGATTCATTGCTTTCATATTATACGAGTTACTTTAGGCCTTCGAAGAAAATATACATGTATCAATGGAATAACCGAAATACATCTACACCAGAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1703#0 ---------------------------------------------------CAATTTTCT 9 consensus_1703#1 GAGGCCAGGATTCGGCACGAGGCGCATTTCAATGATTCCATTCATCATTGTCAATTTTCT 60 ********* consensus_1703#0 ACCATATTTACTTTGTGAGATTGTGAAAACTCCACTCCACCCGTTGGAAAGATCCAATTC 69 consensus_1703#1 ACCATATTTACTTGGTGAGATTGTGAAAATTCCACTCCACCCGTTGGAAAGATCCGATTC 120 ************* *************** ************************* **** consensus_1703#0 ATTGCTTGCACATTTTACGATCTACTTTAAGCCTTCCAATGAGAAACTCCATGTATCAGT 129 consensus_1703#1 ATTGCTTTCATATTATACGAGTTACTTTAGGCCTTCGAA-GAAAATATACATGTATCAAT 179 ******* ** *** ***** ******* ****** ** ** ** * ********* * consensus_1703#0 GGAATAAACAAAATACTTCTACACCAGAACAACTGATTAATTTTGAAAACTTTCAGTATT 189 consensus_1703#1 GGAATAACCGAAATACATCTACACCAGAACAA---------------------------- 211 ******* * ****** *************** consensus_1703#0 ATGGTGAGATATCAGTGGGAACTCCACCTCAAAAGCTACGAGTGTTATTCGATACAGAAT 249 consensus_1703#1 ------------------------------------------------------------ consensus_1703#0 CAACTGACACTTGGTTCGCTTCAAGGAATTGTTGGTTTCTTGATATATTTTGTTGGATGT 309 consensus_1703#1 ------------------------------------------------------------ consensus_1703#0 TTCGGTTGTACGATAGTTCGAAATCATCGACTTATGTAGCAGATGGTTCTAGTTTTCAAG 369 consensus_1703#1 ------------------------------------------------------------ consensus_1703#0 TGAGATATCTGGATAGTGATATCTCTGGATTTTGGAGTGTAGACACTATAAGATAGATCG 429 consensus_1703#1 ------------------------------------------------------------ consensus_1703#0 TTGTGN 435 consensus_1703#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||