cluster # 1705

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1705 cluster # 1705 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1705#0 length = 318 sequences # 1

consensus_1705#1 length = 292 sequences # 1

consensusID : consensus_1705#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 318
fasta sequence

                              [GAGGCGACCTTACTTCAGAGAAAGTACGACTTCCGAGTTGGTTGATCACTGATTTTTGTAGTTTCAGCTAAATGTATCGGGCTTGATTTGCTCAGCATAATTAACAGCAAACCAAGTTGTCGCCGGGGGTAAAGAATTAGCTTTGCGGGTATGGGATATAAATAATCATGGTTCGCCAATTTTCACTGCTAAGAACGTTCGCTCTTCTGTTCTGGAACTTTCTGTCCCCATATGGATTTCTGATGTTAGCGTGGTCCCTAAATCTAATGGAAAGCTCATATTAACTGCCTCAAGATATGGCGAGTTTGACATATACGA]

[+] EMBL CD078127             [GAGGCGACCTTACTTCAGAGAAAGTACGACTTCCGAGTTGGTTGATCACTGATTTTTGTAGTTTCAGCTAAATGTATCGGGCTTGATTTGCTCAGCATAATTAACAGCAAACCAAGTTGTCGCCGGGGGTAAAGAATTAGCTTTGCGGGTATGGGATATAAATAATCATGGTTCGCCAATTTTCACTGCTAAGAACGTTCGCTCTTCTGTTCTGGAACTTTCTGTCCCCATATGGATTTCTGATGTTAGCGTGGTCCCTAAATCTAATGGAAAGCTCATATTAACTGCCTCAAGATATGGCGAGTTTGACATATACGA]




>consensus_1705#0
GAGGCGACCTTACTTCAGAGAAAGTACGACTTCCGAGTTGGTTGATCACTGATTTTTGTA
GTTTCAGCTAAATGTATCGGGCTTGATTTGCTCAGCATAATTAACAGCAAACCAAGTTGT
CGCCGGGGGTAAAGAATTAGCTTTGCGGGTATGGGATATAAATAATCATGGTTCGCCAAT
TTTCACTGCTAAGAACGTTCGCTCTTCTGTTCTGGAACTTTCTGTCCCCATATGGATTTC
TGATGTTAGCGTGGTCCCTAAATCTAATGGAAAGCTCATATTAACTGCCTCAAGATATGG
CGAGTTTGACATATACGA

consensusID : consensus_1705#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence

                              [TTAGAGTTTTTTCCCACGACCTTACTTCAGAGAAATTTCAGCTAAATGTATCGGGCTTGATTTGCTCAGCAAAATTAACAGCAAACCAAGTTGTCGCCGGGGGTAAAGAATTAGCTTTGCGGGTATGGGATATAAATAATCATGGTTCGCCAATTTTCACTGCTAAGAACGTTCGCTCTTCTGTTCTGGAACTTTCTGTCCCCATATGGATTTCTGATGTTAGCGTGGTCCCTAAATCTAATGGAAAGCTCATATTAACTGCCTCAAGATATGGCGAGTTTGACATATACGA]

[-] EMBL CD147432             [TTAGAGTTTTTTCCCACGACCTTACTTCAGAGAAATTTCAGCTAAATGTATCGGGCTTGATTTGCTCAGCAAAATTAACAGCAAACCAAGTTGTCGCCGGGGGTAAAGAATTAGCTTTGCGGGTATGGGATATAAATAATCATGGTTCGCCAATTTTCACTGCTAAGAACGTTCGCTCTTCTGTTCTGGAACTTTCTGTCCCCATATGGATTTCTGATGTTAGCGTGGTCCCTAAATCTAATGGAAAGCTCATATTAACTGCCTCAAGATATGGCGAGTTTGACATATACGA]




>consensus_1705#1
TTAGAGTTTTTTCCCACGACCTTACTTCAGAGAAATTTCAGCTAAATGTATCGGGCTTGA
TTTGCTCAGCAAAATTAACAGCAAACCAAGTTGTCGCCGGGGGTAAAGAATTAGCTTTGC
GGGTATGGGATATAAATAATCATGGTTCGCCAATTTTCACTGCTAAGAACGTTCGCTCTT
CTGTTCTGGAACTTTCTGTCCCCATATGGATTTCTGATGTTAGCGTGGTCCCTAAATCTA
ATGGAAAGCTCATATTAACTGCCTCAAGATATGGCGAGTTTGACATATACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1705#0      GAGGCGACCTTACTTCAGAGAAAGTACGACTTCCGAGTTGGTTGATCACTGATTTTTGTA 60
consensus_1705#1      -----------------------TTAGAGTTTTT---TCCCACGACCTTACTTCAGAGAA 34
                                              **    **     *     ** *     *    * *

consensus_1705#0      GTTTCAGCTAAATGTATCGGGCTTGATTTGCTCAGCATAATTAACAGCAAACCAAGTTGT 120
consensus_1705#1      ATTTCAGCTAAATGTATCGGGCTTGATTTGCTCAGCAAAATTAACAGCAAACCAAGTTGT 94
                       ************************************ **********************

consensus_1705#0      CGCCGGGGGTAAAGAATTAGCTTTGCGGGTATGGGATATAAATAATCATGGTTCGCCAAT 180
consensus_1705#1      CGCCGGGGGTAAAGAATTAGCTTTGCGGGTATGGGATATAAATAATCATGGTTCGCCAAT 154
                      ************************************************************

consensus_1705#0      TTTCACTGCTAAGAACGTTCGCTCTTCTGTTCTGGAACTTTCTGTCCCCATATGGATTTC 240
consensus_1705#1      TTTCACTGCTAAGAACGTTCGCTCTTCTGTTCTGGAACTTTCTGTCCCCATATGGATTTC 214
                      ************************************************************

consensus_1705#0      TGATGTTAGCGTGGTCCCTAAATCTAATGGAAAGCTCATATTAACTGCCTCAAGATATGG 300
consensus_1705#1      TGATGTTAGCGTGGTCCCTAAATCTAATGGAAAGCTCATATTAACTGCCTCAAGATATGG 274
                      ************************************************************

consensus_1705#0      CGAGTTTGACATATACGA 318
consensus_1705#1      CGAGTTTGACATATACGA 292
                      ******************