These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1705#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [GAGGCGACCTTACTTCAGAGAAAGTACGACTTCCGAGTTGGTTGATCACTGATTTTTGTAGTTTCAGCTAAATGTATCGGGCTTGATTTGCTCAGCATAATTAACAGCAAACCAAGTTGTCGCCGGGGGTAAAGAATTAGCTTTGCGGGTATGGGATATAAATAATCATGGTTCGCCAATTTTCACTGCTAAGAACGTTCGCTCTTCTGTTCTGGAACTTTCTGTCCCCATATGGATTTCTGATGTTAGCGTGGTCCCTAAATCTAATGGAAAGCTCATATTAACTGCCTCAAGATATGGCGAGTTTGACATATACGA] [+] EMBL CD078127 [GAGGCGACCTTACTTCAGAGAAAGTACGACTTCCGAGTTGGTTGATCACTGATTTTTGTAGTTTCAGCTAAATGTATCGGGCTTGATTTGCTCAGCATAATTAACAGCAAACCAAGTTGTCGCCGGGGGTAAAGAATTAGCTTTGCGGGTATGGGATATAAATAATCATGGTTCGCCAATTTTCACTGCTAAGAACGTTCGCTCTTCTGTTCTGGAACTTTCTGTCCCCATATGGATTTCTGATGTTAGCGTGGTCCCTAAATCTAATGGAAAGCTCATATTAACTGCCTCAAGATATGGCGAGTTTGACATATACGA] consensusID : consensus_1705#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [TTAGAGTTTTTTCCCACGACCTTACTTCAGAGAAATTTCAGCTAAATGTATCGGGCTTGATTTGCTCAGCAAAATTAACAGCAAACCAAGTTGTCGCCGGGGGTAAAGAATTAGCTTTGCGGGTATGGGATATAAATAATCATGGTTCGCCAATTTTCACTGCTAAGAACGTTCGCTCTTCTGTTCTGGAACTTTCTGTCCCCATATGGATTTCTGATGTTAGCGTGGTCCCTAAATCTAATGGAAAGCTCATATTAACTGCCTCAAGATATGGCGAGTTTGACATATACGA] [-] EMBL CD147432 [TTAGAGTTTTTTCCCACGACCTTACTTCAGAGAAATTTCAGCTAAATGTATCGGGCTTGATTTGCTCAGCAAAATTAACAGCAAACCAAGTTGTCGCCGGGGGTAAAGAATTAGCTTTGCGGGTATGGGATATAAATAATCATGGTTCGCCAATTTTCACTGCTAAGAACGTTCGCTCTTCTGTTCTGGAACTTTCTGTCCCCATATGGATTTCTGATGTTAGCGTGGTCCCTAAATCTAATGGAAAGCTCATATTAACTGCCTCAAGATATGGCGAGTTTGACATATACGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1705#0 GAGGCGACCTTACTTCAGAGAAAGTACGACTTCCGAGTTGGTTGATCACTGATTTTTGTA 60 consensus_1705#1 -----------------------TTAGAGTTTTT---TCCCACGACCTTACTTCAGAGAA 34 ** ** * ** * * * * consensus_1705#0 GTTTCAGCTAAATGTATCGGGCTTGATTTGCTCAGCATAATTAACAGCAAACCAAGTTGT 120 consensus_1705#1 ATTTCAGCTAAATGTATCGGGCTTGATTTGCTCAGCAAAATTAACAGCAAACCAAGTTGT 94 ************************************ ********************** consensus_1705#0 CGCCGGGGGTAAAGAATTAGCTTTGCGGGTATGGGATATAAATAATCATGGTTCGCCAAT 180 consensus_1705#1 CGCCGGGGGTAAAGAATTAGCTTTGCGGGTATGGGATATAAATAATCATGGTTCGCCAAT 154 ************************************************************ consensus_1705#0 TTTCACTGCTAAGAACGTTCGCTCTTCTGTTCTGGAACTTTCTGTCCCCATATGGATTTC 240 consensus_1705#1 TTTCACTGCTAAGAACGTTCGCTCTTCTGTTCTGGAACTTTCTGTCCCCATATGGATTTC 214 ************************************************************ consensus_1705#0 TGATGTTAGCGTGGTCCCTAAATCTAATGGAAAGCTCATATTAACTGCCTCAAGATATGG 300 consensus_1705#1 TGATGTTAGCGTGGTCCCTAAATCTAATGGAAAGCTCATATTAACTGCCTCAAGATATGG 274 ************************************************************ consensus_1705#0 CGAGTTTGACATATACGA 318 consensus_1705#1 CGAGTTTGACATATACGA 292 ****************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||