cluster # 172

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Schistosoma mansoni
cluster # 172 cluster # 172 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_172#0 length = 340 sequences # 1

consensus_172#1 length = 260 sequences # 1

consensusID : consensus_172#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence

                              [AGATTCAGACAGAATATGGGATTCCGAATGGAACCGAAGTTGTGTCGAAGGCTGTCAACGACGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACGTCACTACTAGACCGGCACACAAGGATACTGGCATTGATCCGATTCACGTGTGGGAAAAGAAAACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAATAACACAGGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGCGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTA]

[+] EMBL CD126661             [AGATTCAGACAGAATATGGGATTCCGAATGGAACCGAAGTTGTGTCGAAGGCTGTCAACGACGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACGTCACTACTAGACCGGCACACAAGGATACTGGCATTGATCCGATTCACGTGTGGGAAAAGAAAACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAATAACACAGGCTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGCGATCTGCTAATGCACCTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTA]




>consensus_172#0
AGATTCAGACAGAATATGGGATTCCGAATGGAACCGAAGTTGTGTCGAAGGCTGTCAACG
ACGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACG
TCACTACTAGACCGGCACACAAGGATACTGGCATTGATCCGATTCACGTGTGGGAAAAGA
AAACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAATAACACAGG
CTGCATCTTCAAGAACAACGCGCCTCAATGTTTCATGCTGCGATCTGCTAATGCACCTTG
TTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTA

consensusID : consensus_172#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTACTGTTACAAAATATTTACTTTAAAAACATAATAGAAGTGAATTAATGTAACATGATTTCGGTTATCGTTTTGGTAAAGGTTAGATCAAACAAAGAGTAGATATTCCGCATTATCAAATGATCGTTTCCAAACGTTTGATTAACGCCTTCCATATTTCTTAGACGAATATCTACACTAGATTCCCACCCAGTGTCTATTCTACAAGACTTCAACACAACTCAGATCAAGAACA]

[+] EMBL AI395144             [TTTTTTTTTTTTTTTTTTTTTTTTTTTACTGTTACAAAATATTTACTTTAAAAACATAATAGAAGTGAATTAATGTAACATGATTTCGGTTATCGTTTTGGTAAAGGTTAGATCAAACAAAGAGTAGATATTCCGCATTATCAAATGATCGTTTCCAAACGTTTGATTAACGCCTTCCATATTTCTTAGACGAATATCTACACTAGATTCCCACCCAGTGTCTATTCTACAAGACTTCAACACAACTCAGATCAAGAACA]




>consensus_172#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTACTGTTACAAAATATTTACTTTAAAAACATAAT
AGAAGTGAATTAATGTAACATGATTTCGGTTATCGTTTTGGTAAAGGTTAGATCAAACAA
AGAGTAGATATTCCGCATTATCAAATGATCGTTTCCAAACGTTTGATTAACGCCTTCCAT
ATTTCTTAGACGAATATCTACACTAGATTCCCACCCAGTGTCTATTCTACAAGACTTCAA
CACAACTCAGATCAAGAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_172#0      AGATTCAGACAGAATATGGGATTCCGAATGGAACCGAAGTTGTGTCGAAGGCTGTCAACG 60
consensus_172#1      ----------------------------------------------------TTTTTTTT 8
                                                                         * *     

consensus_172#0      ACGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACG 120
consensus_172#1      TTTTTTTTTTTTTTTTTTTACTGTT-----ACAAAATATTTAC---TTTAA--AAACATA 58
                        ** * * *    *   ** * *     *  ** ***  **    * *    ** *  

consensus_172#0      TCACTACTAGACCGGCACACAAGGATACTGGC-ATTGATCCGATTCACGTGTGGGAAAAG 179
consensus_172#1      ATAGAAGTGAATTAATGTAACATGATTTCGGTTATCGTTTTGGT--AAAGGTTAGATCAA 116
                       *  * *  *       *  * ***   **  ** * *  * *  *   **  **  * 

consensus_172#0      AAAACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAATAACACAG 239
consensus_172#1      ACAAAGAGTAGATATTCCGCATTATCAAATGATCGTTTCCAAACGTTTGAT-TAACGCCT 175
                     * ** *   *   **  **       **  *    * * ** ** *   *  **** *  

consensus_172#0      GCTGCATCTTCAAGAACAACGC--GCCTCAATGTTTCATGCTGCGATC-TGCTAATGCAC 296
consensus_172#1      TCCATATTTCTTAGACGAATATCTACACTAGATTCCCACCCAGTGTCTATTCTACAAGAC 235
                      *   ** *   ***  **      *   *   *  **  * * *    * ***    **

consensus_172#0      CTTGTTACTGGGTAGAACTAATCGACTCCTAAAATTTGTGACTA 340
consensus_172#1      TTCAACACAACTCAGATCAAGAACA------------------- 260
                      *    **     *** * *    *