cluster # 1727

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Schistosoma mansoni
cluster # 1727 cluster # 1727 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1727#0 length = 526 sequences # 1

consensus_1727#1 length = 424 sequences # 1

consensusID : consensus_1727#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [AAATTAATGTATACAGAAAAGTCTCTCGTATAAATTTAACTCTAAACTACTTATCAACATCACAACAATTTAGTTTCAGAAAGCTTCCCAACCAATAGTTTACTCCTAACGGAATAGGTATATCAAAAAGCATAATTTGTGAATCTATGCATACCACGTTGGTTCCGCTATTACTTGGGCGTTTGCCGAATAAATTGACACTTATGTGTTATTCTTTCTAGGCAGTACATTCGAAATCAAATACGGAAGATCTACGGTCTGTTTTTAATAAGGTCAGTTAACGCTGTTTATTGTACTTAATACTCTGATCATGTACTCGTTTTTCATTAGAACAAAGTTACTTTTTAGTCTCATTTAAGTGACGCTTTTCATTTAGAAATAATTTTTAACATTGTACGGGATTGACATTGGTTTGACTTGTATAACACATACCCCAGCTAATCCAACCGGTTCAAATTAATAGCCTCAGACGCTTTTACTACAGCTCCGTGCTCACATTACGCATTCAGTGGTTCTACTGTAGACA]

[+] EMBL CD062215             [AAATTAATGTATACAGAAAAGTCTCTCGTATAAATTTAACTCTAAACTACTTATCAACATCACAACAATTTAGTTTCAGAAAGCTTCCCAACCAATAGTTTACTCCTAACGGAATAGGTATATCAAAAAGCATAATTTGTGAATCTATGCATACCACGTTGGTTCCGCTATTACTTGGGCGTTTGCCGAATAAATTGACACTTATGTGTTATTCTTTCTAGGCAGTACATTCGAAATCAAATACGGAAGATCTACGGTCTGTTTTTAATAAGGTCAGTTAACGCTGTTTATTGTACTTAATACTCTGATCATGTACTCGTTTTTCATTAGAACAAAGTTACTTTTTAGTCTCATTTAAGTGACGCTTTTCATTTAGAAATAATTTTTAACATTGTACGGGATTGACATTGGTTTGACTTGTATAACACATACCCCAGCTAATCCAACCGGTTCAAATTAATAGCCTCAGACGCTTTTACTACAGCTCCGTGCTCACATTACGCATTCAGTGGTTCTACTGTAGACA]




>consensus_1727#0
AAATTAATGTATACAGAAAAGTCTCTCGTATAAATTTAACTCTAAACTACTTATCAACAT
CACAACAATTTAGTTTCAGAAAGCTTCCCAACCAATAGTTTACTCCTAACGGAATAGGTA
TATCAAAAAGCATAATTTGTGAATCTATGCATACCACGTTGGTTCCGCTATTACTTGGGC
GTTTGCCGAATAAATTGACACTTATGTGTTATTCTTTCTAGGCAGTACATTCGAAATCAA
ATACGGAAGATCTACGGTCTGTTTTTAATAAGGTCAGTTAACGCTGTTTATTGTACTTAA
TACTCTGATCATGTACTCGTTTTTCATTAGAACAAAGTTACTTTTTAGTCTCATTTAAGT
GACGCTTTTCATTTAGAAATAATTTTTAACATTGTACGGGATTGACATTGGTTTGACTTG
TATAACACATACCCCAGCTAATCCAACCGGTTCAAATTAATAGCCTCAGACGCTTTTACT
ACAGCTCCGTGCTCACATTACGCATTCAGTGGTTCTACTGTAGACA

consensusID : consensus_1727#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [AAAACAGCGCGGAGATCGTTTTCGTTTCGCCACATGGCAGTACATTCGAAATCAAATACGGAAGATCTACGGTCTGTTTTTAATAAGTATGCCAGTGTTAGCAAAAGTGGTCAAATGTATATGACTCCGAAAGATTTCGCTGTCAAATATCTACGTTTATTCGATGACGAAAATTACAATGTATCATCAGTTAATTGTATTGCAAGTGCTGCCGACACTACAAAAGATGGATTGATTTCTTTCGAAGAATTTCTGGCATTTGAAGCTCTTCTATGCACACGCGATTCTTTGTATTTGTGGACATTTGAACTGTTCAATCAAGACGGTCTCGGNGTCATATCATTTGACAATTACAAGAAAACACTCGATATGACATTGGTGAACAAAGAGTTCACGTTTAAATTCGATTGTGATTTCATCAACC]

[+] EMBL CD189280             [AAAACAGCGCGGAGATCGTTTTCGTTTCGCCACATGGCAGTACATTCGAAATCAAATACGGAAGATCTACGGTCTGTTTTTAATAAGTATGCCAGTGTTAGCAAAAGTGGTCAAATGTATATGACTCCGAAAGATTTCGCTGTCAAATATCTACGTTTATTCGATGACGAAAATTACAATGTATCATCAGTTAATTGTATTGCAAGTGCTGCCGACACTACAAAAGATGGATTGATTTCTTTCGAAGAATTTCTGGCATTTGAAGCTCTTCTATGCACACGCGATTCTTTGTATTTGTGGACATTTGAACTGTTCAATCAAGACGGTCTCGGNGTCATATCATTTGACAATTACAAGAAAACACTCGATATGACATTGGTGAACAAAGAGTTCACGTTTAAATTCGATTGTGATTTCATCAACC]




>consensus_1727#1
AAAACAGCGCGGAGATCGTTTTCGTTTCGCCACATGGCAGTACATTCGAAATCAAATACG
GAAGATCTACGGTCTGTTTTTAATAAGTATGCCAGTGTTAGCAAAAGTGGTCAAATGTAT
ATGACTCCGAAAGATTTCGCTGTCAAATATCTACGTTTATTCGATGACGAAAATTACAAT
GTATCATCAGTTAATTGTATTGCAAGTGCTGCCGACACTACAAAAGATGGATTGATTTCT
TTCGAAGAATTTCTGGCATTTGAAGCTCTTCTATGCACACGCGATTCTTTGTATTTGTGG
ACATTTGAACTGTTCAATCAAGACGGTCTCGGNGTCATATCATTTGACAATTACAAGAAA
ACACTCGATATGACATTGGTGAACAAAGAGTTCACGTTTAAATTCGATTGTGATTTCATC
AACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1727#0      AAATTAATGTATACAGAAAAGTCTCTCGTATAAATTTAACTCTAAACTACTTATCAACAT 60
consensus_1727#1      ------------------------------------------------------------
                                                                                  

consensus_1727#0      CACAACAATTTAGTTTCAGAAAGCTTCCCAACCAATAGTTTACTCCTAACGGAATAG--G 118
consensus_1727#1      -------------------AAAACAGCGCGGA-GATCGTTTTCGTTTCGCCACATGGCAG 40
                                         *** *  * *     ** **** *   *  *   ** *  *

consensus_1727#0      TATATCAAAAAGCATAATTTGTGAATCTATG--CATACCACGTTGGTTCCGCTATTACTT 176
consensus_1727#1      TACATTCGAAATCAAATACGGAAGATCTACGGTCTGTTTTTAATAAGTATGCCAGTGTTA 100
                      ** **   *** ** *    *   ***** *  *         *   *  ** * *  * 

consensus_1727#0      G-GGCGTTTGCCGAATAAAT-TGACACTTATGTGTTATTCTTTCTAGGCAGTACATTCGA 234
consensus_1727#1      GCAAAAGTGGTCAAATGTATATGACTCCGAAAGATTTCGCTGTCAAATATCTACGTTT-- 158
                      *      * * * ***  ** **** *  *    **   ** ** *     *** **   

consensus_1727#0      AATCAAATACGGAAGATCTACGGTCTGTTTTTAATAAGGTCAGTTAACGCTGTTTATTGT 294
consensus_1727#1      -ATTCGATGACGAAAAT-TACAATGTATCATCAGTTAATTGTATTGCAAGTGCTGCCGAC 216
                       **   **   *** ** ***  * * *  * * * *  *   **     ** *      

consensus_1727#0      ACTTAATACTCTGATCATGTACTCGTTTTTCATTAGAACAAAGTTACTTTTTAGTCTCAT 354
consensus_1727#1      ACT------ACAAAAGATGGATTGATTTCT--TTCGAAGAA------TTTCTGG---CAT 259
                      ***       *  *  *** * *  *** *  ** *** **      *** * *   ***

consensus_1727#0      TTAAGTGACGCTTTTCATTTAGAAATAATTTTTAACATTGTACGGGATTGACATTGGTTT 414
consensus_1727#1      TTGA---AGCTCTTCTATGCACACGCGATTCTTTGTATTTGTGGACATTTGAACTG-TTC 315
                      ** *   *    **  **  * *    *** **   ***    *  ***   * ** ** 

consensus_1727#0      GACTTGTATAACACATACCCCAGCTAATCCAACCGGTTCAAATTAATAGCCTCAGACGCT 474
consensus_1727#1      AATCAAGACGGTCTCGGNGTCATATCATTTGACAATTACAAGAAAACA-CTCGATATGAC 374
                       *     *            **  * **   **   * ***   ** * *   * * *  

consensus_1727#0      TTTACTACAGCTCCGTGCTCACATTACGCATTCAGTGGTTCTACTGTAGACA 526
consensus_1727#1      ATTGGTG-AACAAAGAGTTCACGTT-TAAATTCGATTGTGATTTCATCAACC 424
                       **  *  * *   * * **** **    ****  * **  *    *  **