These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1727#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [AAATTAATGTATACAGAAAAGTCTCTCGTATAAATTTAACTCTAAACTACTTATCAACATCACAACAATTTAGTTTCAGAAAGCTTCCCAACCAATAGTTTACTCCTAACGGAATAGGTATATCAAAAAGCATAATTTGTGAATCTATGCATACCACGTTGGTTCCGCTATTACTTGGGCGTTTGCCGAATAAATTGACACTTATGTGTTATTCTTTCTAGGCAGTACATTCGAAATCAAATACGGAAGATCTACGGTCTGTTTTTAATAAGGTCAGTTAACGCTGTTTATTGTACTTAATACTCTGATCATGTACTCGTTTTTCATTAGAACAAAGTTACTTTTTAGTCTCATTTAAGTGACGCTTTTCATTTAGAAATAATTTTTAACATTGTACGGGATTGACATTGGTTTGACTTGTATAACACATACCCCAGCTAATCCAACCGGTTCAAATTAATAGCCTCAGACGCTTTTACTACAGCTCCGTGCTCACATTACGCATTCAGTGGTTCTACTGTAGACA] [+] EMBL CD062215 [AAATTAATGTATACAGAAAAGTCTCTCGTATAAATTTAACTCTAAACTACTTATCAACATCACAACAATTTAGTTTCAGAAAGCTTCCCAACCAATAGTTTACTCCTAACGGAATAGGTATATCAAAAAGCATAATTTGTGAATCTATGCATACCACGTTGGTTCCGCTATTACTTGGGCGTTTGCCGAATAAATTGACACTTATGTGTTATTCTTTCTAGGCAGTACATTCGAAATCAAATACGGAAGATCTACGGTCTGTTTTTAATAAGGTCAGTTAACGCTGTTTATTGTACTTAATACTCTGATCATGTACTCGTTTTTCATTAGAACAAAGTTACTTTTTAGTCTCATTTAAGTGACGCTTTTCATTTAGAAATAATTTTTAACATTGTACGGGATTGACATTGGTTTGACTTGTATAACACATACCCCAGCTAATCCAACCGGTTCAAATTAATAGCCTCAGACGCTTTTACTACAGCTCCGTGCTCACATTACGCATTCAGTGGTTCTACTGTAGACA] consensusID : consensus_1727#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [AAAACAGCGCGGAGATCGTTTTCGTTTCGCCACATGGCAGTACATTCGAAATCAAATACGGAAGATCTACGGTCTGTTTTTAATAAGTATGCCAGTGTTAGCAAAAGTGGTCAAATGTATATGACTCCGAAAGATTTCGCTGTCAAATATCTACGTTTATTCGATGACGAAAATTACAATGTATCATCAGTTAATTGTATTGCAAGTGCTGCCGACACTACAAAAGATGGATTGATTTCTTTCGAAGAATTTCTGGCATTTGAAGCTCTTCTATGCACACGCGATTCTTTGTATTTGTGGACATTTGAACTGTTCAATCAAGACGGTCTCGGNGTCATATCATTTGACAATTACAAGAAAACACTCGATATGACATTGGTGAACAAAGAGTTCACGTTTAAATTCGATTGTGATTTCATCAACC] [+] EMBL CD189280 [AAAACAGCGCGGAGATCGTTTTCGTTTCGCCACATGGCAGTACATTCGAAATCAAATACGGAAGATCTACGGTCTGTTTTTAATAAGTATGCCAGTGTTAGCAAAAGTGGTCAAATGTATATGACTCCGAAAGATTTCGCTGTCAAATATCTACGTTTATTCGATGACGAAAATTACAATGTATCATCAGTTAATTGTATTGCAAGTGCTGCCGACACTACAAAAGATGGATTGATTTCTTTCGAAGAATTTCTGGCATTTGAAGCTCTTCTATGCACACGCGATTCTTTGTATTTGTGGACATTTGAACTGTTCAATCAAGACGGTCTCGGNGTCATATCATTTGACAATTACAAGAAAACACTCGATATGACATTGGTGAACAAAGAGTTCACGTTTAAATTCGATTGTGATTTCATCAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1727#0 AAATTAATGTATACAGAAAAGTCTCTCGTATAAATTTAACTCTAAACTACTTATCAACAT 60 consensus_1727#1 ------------------------------------------------------------ consensus_1727#0 CACAACAATTTAGTTTCAGAAAGCTTCCCAACCAATAGTTTACTCCTAACGGAATAG--G 118 consensus_1727#1 -------------------AAAACAGCGCGGA-GATCGTTTTCGTTTCGCCACATGGCAG 40 *** * * * ** **** * * * ** * * consensus_1727#0 TATATCAAAAAGCATAATTTGTGAATCTATG--CATACCACGTTGGTTCCGCTATTACTT 176 consensus_1727#1 TACATTCGAAATCAAATACGGAAGATCTACGGTCTGTTTTTAATAAGTATGCCAGTGTTA 100 ** ** *** ** * * ***** * * * * ** * * * consensus_1727#0 G-GGCGTTTGCCGAATAAAT-TGACACTTATGTGTTATTCTTTCTAGGCAGTACATTCGA 234 consensus_1727#1 GCAAAAGTGGTCAAATGTATATGACTCCGAAAGATTTCGCTGTCAAATATCTACGTTT-- 158 * * * * *** ** **** * * ** ** ** * *** ** consensus_1727#0 AATCAAATACGGAAGATCTACGGTCTGTTTTTAATAAGGTCAGTTAACGCTGTTTATTGT 294 consensus_1727#1 -ATTCGATGACGAAAAT-TACAATGTATCATCAGTTAATTGTATTGCAAGTGCTGCCGAC 216 ** ** *** ** *** * * * * * * * * ** ** * consensus_1727#0 ACTTAATACTCTGATCATGTACTCGTTTTTCATTAGAACAAAGTTACTTTTTAGTCTCAT 354 consensus_1727#1 ACT------ACAAAAGATGGATTGATTTCT--TTCGAAGAA------TTTCTGG---CAT 259 *** * * *** * * *** * ** *** ** *** * * *** consensus_1727#0 TTAAGTGACGCTTTTCATTTAGAAATAATTTTTAACATTGTACGGGATTGACATTGGTTT 414 consensus_1727#1 TTGA---AGCTCTTCTATGCACACGCGATTCTTTGTATTTGTGGACATTTGAACTG-TTC 315 ** * * ** ** * * *** ** *** * *** * ** ** consensus_1727#0 GACTTGTATAACACATACCCCAGCTAATCCAACCGGTTCAAATTAATAGCCTCAGACGCT 474 consensus_1727#1 AATCAAGACGGTCTCGGNGTCATATCATTTGACAATTACAAGAAAACA-CTCGATATGAC 374 * * ** * ** ** * *** ** * * * * * consensus_1727#0 TTTACTACAGCTCCGTGCTCACATTACGCATTCAGTGGTTCTACTGTAGACA 526 consensus_1727#1 ATTGGTG-AACAAAGAGTTCACGTT-TAAATTCGATTGTGATTTCATCAACC 424 ** * * * * * **** ** **** * ** * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||