cluster # 1737

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Schistosoma mansoni
cluster # 1737 cluster # 1737 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1737#0 length = 442 sequences # 1

consensus_1737#1 length = 416 sequences # 1

consensusID : consensus_1737#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [AGAAAGTGACGAGCGAGACATAGCATCGTCGAAGACAAGAGGTGAATGACTGTGACTCAAGGCCTGGAGCCAAAACAGTAAAATGAGGTCAGATGACGATAATTCAGTTTTTTTTTAAAAAAAAAAACAAGTTTATGGTGAATATAAACCAAGAACATACCCATGACATGTACTCATTGATCATATTTCGTGGTTCTTTGAATCTAAAACAAGAAAATCAATTTAAAGACTCCTAACTTACGGTTTTACACTCCTGTACTTCTCCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGGCCATAGACATTACTCACCTTTCCAATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTTTGTCCAAGATGACTGTAGCATTGACTAAACAACTTCTTTCCAGCAAAAATACAATTCCCCATTGTGTCTTGTAATAGGTTACT]

[+] EMBL CD160140             [AGAAAGTGACGAGCGAGACATAGCATCGTCGAAGACAAGAGGTGAATGACTGTGACTCAAGGCCTGGAGCCAAAACAGTAAAATGAGGTCAGATGACGATAATTCAGTTTTTTTTTAAAAAAAAAAACAAGTTTATGGTGAATATAAACCAAGAACATACCCATGACATGTACTCATTGATCATATTTCGTGGTTCTTTGAATCTAAAACAAGAAAATCAATTTAAAGACTCCTAACTTACGGTTTTACACTCCTGTACTTCTCCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGGCCATAGACATTACTCACCTTTCCAATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTTTGTCCAAGATGACTGTAGCATTGACTAAACAACTTCTTTCCAGCAAAAATACAATTCCCCATTGTGTCTTGTAATAGGTTACT]




>consensus_1737#0
AGAAAGTGACGAGCGAGACATAGCATCGTCGAAGACAAGAGGTGAATGACTGTGACTCAA
GGCCTGGAGCCAAAACAGTAAAATGAGGTCAGATGACGATAATTCAGTTTTTTTTTAAAA
AAAAAAACAAGTTTATGGTGAATATAAACCAAGAACATACCCATGACATGTACTCATTGA
TCATATTTCGTGGTTCTTTGAATCTAAAACAAGAAAATCAATTTAAAGACTCCTAACTTA
CGGTTTTACACTCCTGTACTTCTCCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGGC
CATAGACATTACTCACCTTTCCAATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTTT
GTCCAAGATGACTGTAGCATTGACTAAACAACTTCTTTCCAGCAAAAATACAATTCCCCA
TTGTGTCTTGTAATAGGTTACT

consensusID : consensus_1737#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence

                              [TTGATTTATTTAACGGATCTAATTCTTTATACAATACATGAGAAGCATCACTGCGCGCCCCATCACTAACCCAACTAGAAGAAATTGGTATACTTGACTCATCAAAATGCGAAGAAAGTGACGAGCGAGACATAGCATCGTCGAAGACAGGAGGTGAATGACTGTGACTCAAGGCCCATGACATGTACTCATTGATCATATTTCGTGGTTCTTTGAATGGTTTTACACTCCTGTACTTCTCCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGGCCATAGACATTACTCACCTTTCCAATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTTTGTCCAAGATGACTGTAGCATCTACTGACTAAACAACTTCTTTCCAGCAAAAATACAATTCCCCATTGTGTTTTGTAATA]

[+] EMBL CD062271             [TTGATTTATTTAACGGATCTAATTCTTTATACAATACATGAGAAGCATCACTGCGCGCCCCATCACTAACCCAACTAGAAGAAATTGGTATACTTGACTCATCAAAATGCGAAGAAAGTGACGAGCGAGACATAGCATCGTCGAAGACAGGAGGTGAATGACTGTGACTCAAGGCCCATGACATGTACTCATTGATCATATTTCGTGGTTCTTTGAATGGTTTTACACTCCTGTACTTCTCCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGGCCATAGACATTACTCACCTTTCCAATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTTTGTCCAAGATGACTGTAGCATCTACTGACTAAACAACTTCTTTCCAGCAAAAATACAATTCCCCATTGTGTTTTGTAATA]




>consensus_1737#1
TTGATTTATTTAACGGATCTAATTCTTTATACAATACATGAGAAGCATCACTGCGCGCCC
CATCACTAACCCAACTAGAAGAAATTGGTATACTTGACTCATCAAAATGCGAAGAAAGTG
ACGAGCGAGACATAGCATCGTCGAAGACAGGAGGTGAATGACTGTGACTCAAGGCCCATG
ACATGTACTCATTGATCATATTTCGTGGTTCTTTGAATGGTTTTACACTCCTGTACTTCT
CCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGGCCATAGACATTACTCACCTTTCCA
ATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTTTGTCCAAGATGACTGTAGCATCTA
CTGACTAAACAACTTCTTTCCAGCAAAAATACAATTCCCCATTGTGTTTTGTAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1737#0      AGAAAGTGACGAGCGAGACATAG-CATCGTCGAAGACAAGAGGTGAATGACTGTGACTCA 59
consensus_1737#1      TTGATTTATTTAACGGATCTAATTCTTTATACAATACATGAGAAGCATCACTGCGC---- 56
                         *  *    * **   *  *  * *  *  ** *** ***  * ** **** *     

consensus_1737#0      AGGCCTGGAGCCAAAACAGTAAAATGAGGTCAGATGACGATAATTCAGTTTTTTTTTAAA 119
consensus_1737#1      -GCCCCATCACTAACCCAACTAGAAGAAATTGGT-----ATACTTGA----CTCATCAAA 106
                       * **     * **  **   * * **  *  *      *** ** *     *  * ***

consensus_1737#0      AAAAAAAACAAGTTTATGGTGAATATAAACCAAGAACATACCCATGACATGTACTCATTG 179
consensus_1737#1      ATGCGAAGAAAGT----GACGAGCGAGACATAGCATCGT--CGAAGACAGGAGGTGAATG 160
                      *    **  ****    *  **     *   *  * * *  * * **** *   * * **

consensus_1737#0      ATCATATTTCGTGGTTCTTTGAATCTAAAACAAGAAAATCAATTTAAAGACTCCTAACTT 239
consensus_1737#1      ACTGTGACTCAAGGCCCATGACATGTACTCATTGATCAT--ATTTCGTGGTTCTTTGA-- 216
                      *   *   **  **  * *   ** **      **  **  ****   *  ** *     

consensus_1737#0      ACGGTTTTACACTCCTGTACTTCTCCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGG 299
consensus_1737#1      ATGGTTTTACACTCCTGTACTTCTCCTTAGAAATAAAAAATGAGTTGGTTGAATTATGGG 276
                      * **********************************************************

consensus_1737#0      CCATAGACATTACTCACCTTTCCAATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTT 359
consensus_1737#1      CCATAGACATTACTCACCTTTCCAATTAAGCAATCAAACTCGGCAGAGGATTTTCTACTT 336
                      ************************************************************

consensus_1737#0      TGTCCAAGATGACTGTAGCAT----TGACTAAACAACTTCTTTCCAGCAAAAATACAATT 415
consensus_1737#1      TGTCCAAGATGACTGTAGCATCTACTGACTAAACAACTTCTTTCCAGCAAAAATACAATT 396
                      *********************    ***********************************

consensus_1737#0      CCCCATTGTGTCTTGTAATAGGTTACT 442
consensus_1737#1      CCCCATTGTGTTTTGTAATA------- 416
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