cluster # 1763

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Schistosoma mansoni
cluster # 1763 cluster # 1763 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1763#0 length = 344 sequences # 1

consensus_1763#1 length = 305 sequences # 1

consensusID : consensus_1763#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [CACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAAGTATTTTCATTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGTCTTCTTTGGATGCGAACGAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACCACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAACTAACATTGCCCTCTATTTTAGTTATAAAAACGAGAAAAAGTATTTGCATACCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCA]

[+] EMBL CD145072             [CACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAAGTATTTTCATTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGTCTTCTTTGGATGCGAACGAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACCACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAACTAACATTGCCCTCTATTTTAGTTATAAAAACGAGAAAAAGTATTTGCATACCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCA]




>consensus_1763#0
CACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAAGTATTTTCA
TTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAG
TCTTCTTTGGATGCGAACGAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAAC
CACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATA
ACTAACATTGCCCTCTATTTTAGTTATAAAAACGAGAAAAAGTATTTGCATACCCACTGA
AGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCA

consensusID : consensus_1763#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [ACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAGGTATTTTCATTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGTCTTCTTTGGATGCGAACAAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACCACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAACTAACATTGCCCTCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCAG]

[-] EMBL CD145148             [ACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAGGTATTTTCATTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGTCTTCTTTGGATGCGAACAAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACCACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAACTAACATTGCCCTCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCAG]




>consensus_1763#1
ACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAGGTATTTTCAT
TTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAGT
CTTCTTTGGATGCGAACAAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAACC
ACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATAA
CTAACATTGCCCTCCACTGAAGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGC
GGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1763#0      CACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAAGTATTTTCA 60
consensus_1763#1      -ACAAGTGAATCAACAACGATTCGGTAATAAACAATGAGGATGCAATGAAGGTATTTTCA 59
                       ************************************************* *********

consensus_1763#0      TTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAG 120
consensus_1763#1      TTTGAGTTAATTCTGTAATTGGATATTCAACGAGATGGTGGAAGCTAGCCTCAGATGTAG 119
                      ************************************************************

consensus_1763#0      TCTTCTTTGGATGCGAACGAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAAC 180
consensus_1763#1      TCTTCTTTGGATGCGAACAAATAATTTTGAATACCATTTAACCGACAACAGCAGTTTAAC 179
                      ****************** *****************************************

consensus_1763#0      CACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATA 240
consensus_1763#1      CACTCGGTCAGAGCAACATCATGTCCTAAACATTGGGTCTTCACATTTCTAATGTTGATA 239
                      ************************************************************

consensus_1763#0      ACTAACATTGCCCTCTATTTTAGTTATAAAAACGAGAAAAAGTATTTGCATACCCACTGA 300
consensus_1763#1      ACTAACATTGCCCTC---------------------------------------CACTGA 260
                      ***************                                       ******

consensus_1763#0      AGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCA- 344
consensus_1763#1      AGGAGAAAAAGCATAAAGTAACGCATAGATTCTGTAATGCGGCAG 305
                      ********************************************