These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [AGTTTCCGAATGGAGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGACAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACGGTGACGACTGCCTTCAGGTTTCAGAGTCCTTCGAAGCAACACTGATACCTCCAAATATATAGCTAATGAACAAAATCCCGGCTATCATTATGCTAATGACCAACTGTCAAATATCCCAGAGAAAATACATAACCTCAATGACCTGAAACGAAAAGAACACCAGTGATTCGCTTGATGTGCCTATGGCCTTGTGATCTTCACTATCCTCANATAGACTGCAGTTGCCGCTTACTCATTTCCTTCTGATTGCAAACACCGTTGAGATTCATATCATAACAGTTATTGNAGTTGTCAATTAACGGAGCGGAGCTA] [+] EMBL CD078482 [AGTTTCCGAATGGAGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGACAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACGGTGACGACTGCCTTCAGGTTTCAGAGTCCTTCGAAGCAACACTGATACCTCCAAATATATAGCTAATGAACAAAATCCCGGCTATCATTATGCTAATGACCAACTGTCAAATATCCCAGAGAAAATACATAACCTCAATGACCTGAAACGAAAAGAACACCAGTGATTCGCTTGATGTGCCTATGGCCTTGTGATCTTCACTATCCTCANATAGACTGCAGTTGCCGCTTACTCATTTCCTTCTGATTGCAAACACCGTTGAGATTCATATCATAACAGTTATTGNAGTTGTCAATTAACGGAGCGGAGCTA] consensusID : consensus_1765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [AGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGGCAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACNGTGACNACTGCCTTCAGGTTTCAGANTCCTTCNAAGCAACACTGATACCTCCCAAATATATAGCTAATGAAACNAAATCCCGGNTATCNNTAATGGTATAATTCCCTTAAANTGAACCATTTNCNCTTTTTATCCCAATT] [+] EMBL AW466256 [AGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGGCAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACNGTGACNACTGCCTTCAGGTTTCAGANTCCTTCNAAGCAACACTGATACCTCCCAAATATATAGCTAATGAAACNAAATCCCGGNTATCNNTAATGGTATAATTCCCTTAAANTGAACCATTTNCNCTTTTTATCCCAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1765#0 AGTTTCCGAATGGAGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAA 60 consensus_1765#1 -------------AGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAA 47 *********************************************** consensus_1765#0 GTAACGACAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTA 120 consensus_1765#1 GTAACGGCAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTA 107 ****** ***************************************************** consensus_1765#0 AATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAA 180 consensus_1765#1 AATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAA 167 ************************************************************ consensus_1765#0 AGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAA 240 consensus_1765#1 AGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAA 227 ************************************************************ consensus_1765#0 GTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACG 300 consensus_1765#1 GTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACN 287 *********************************************************** consensus_1765#0 GTGACGACTGCCTTCAGGTTTCAGAGTCCTTCGAAGCAACACTGATACCTCC-AAATATA 359 consensus_1765#1 GTGACNACTGCCTTCAGGTTTCAGANTCCTTCNAAGCAACACTGATACCTCCCAAATATA 347 ***** ******************* ****** ******************* ******* consensus_1765#0 TAGCTAATGAA-CAAAATCCCGGCTATCATTATGCTAATGACCAACTGTCAAATATCCCA 418 consensus_1765#1 TAGCTAATGAAACNAAATCCCGGNTATCNNTAATGGTATAATTCCCT-TAAANTGAACCA 406 *********** * ********* **** ** ** * ** * ** * *** consensus_1765#0 GAGAAAATACATAACCTCAATGACCTGAAACGAAAAGAACACCAGTGATTCGCTTGATGT 478 consensus_1765#1 TTTNCNCTTTTTATCCCAATT--------------------------------------- 427 * ** ** * * consensus_1765#0 GCCTATGGCCTTGTGATCTTCACTATCCTCANATAGACTGCAGTTGCCGCTTACTCATTT 538 consensus_1765#1 ------------------------------------------------------------ consensus_1765#0 CCTTCTGATTGCAAACACCGTTGAGATTCATATCATAACAGTTATTGNAGTTGTCAATTA 598 consensus_1765#1 ------------------------------------------------------------ consensus_1765#0 ACGGAGCGGAGCTA 612 consensus_1765#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||