cluster # 1765

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Schistosoma mansoni
cluster # 1765 cluster # 1765 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1765#0 length = 612 sequences # 1

consensus_1765#1 length = 427 sequences # 1

consensusID : consensus_1765#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence

                              [AGTTTCCGAATGGAGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGACAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACGGTGACGACTGCCTTCAGGTTTCAGAGTCCTTCGAAGCAACACTGATACCTCCAAATATATAGCTAATGAACAAAATCCCGGCTATCATTATGCTAATGACCAACTGTCAAATATCCCAGAGAAAATACATAACCTCAATGACCTGAAACGAAAAGAACACCAGTGATTCGCTTGATGTGCCTATGGCCTTGTGATCTTCACTATCCTCANATAGACTGCAGTTGCCGCTTACTCATTTCCTTCTGATTGCAAACACCGTTGAGATTCATATCATAACAGTTATTGNAGTTGTCAATTAACGGAGCGGAGCTA]

[+] EMBL CD078482             [AGTTTCCGAATGGAGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGACAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACGGTGACGACTGCCTTCAGGTTTCAGAGTCCTTCGAAGCAACACTGATACCTCCAAATATATAGCTAATGAACAAAATCCCGGCTATCATTATGCTAATGACCAACTGTCAAATATCCCAGAGAAAATACATAACCTCAATGACCTGAAACGAAAAGAACACCAGTGATTCGCTTGATGTGCCTATGGCCTTGTGATCTTCACTATCCTCANATAGACTGCAGTTGCCGCTTACTCATTTCCTTCTGATTGCAAACACCGTTGAGATTCATATCATAACAGTTATTGNAGTTGTCAATTAACGGAGCGGAGCTA]




>consensus_1765#0
AGTTTCCGAATGGAGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAA
GTAACGACAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTA
AATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAA
AGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAA
GTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACG
GTGACGACTGCCTTCAGGTTTCAGAGTCCTTCGAAGCAACACTGATACCTCCAAATATAT
AGCTAATGAACAAAATCCCGGCTATCATTATGCTAATGACCAACTGTCAAATATCCCAGA
GAAAATACATAACCTCAATGACCTGAAACGAAAAGAACACCAGTGATTCGCTTGATGTGC
CTATGGCCTTGTGATCTTCACTATCCTCANATAGACTGCAGTTGCCGCTTACTCATTTCC
TTCTGATTGCAAACACCGTTGAGATTCATATCATAACAGTTATTGNAGTTGTCAATTAAC
GGAGCGGAGCTA

consensusID : consensus_1765#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [AGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGGCAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACNGTGACNACTGCCTTCAGGTTTCAGANTCCTTCNAAGCAACACTGATACCTCCCAAATATATAGCTAATGAAACNAAATCCCGGNTATCNNTAATGGTATAATTCCCTTAAANTGAACCATTTNCNCTTTTTATCCCAATT]

[+] EMBL AW466256             [AGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGGCAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACNGTGACNACTGCCTTCAGGTTTCAGANTCCTTCNAAGCAACACTGATACCTCCCAAATATATAGCTAATGAAACNAAATCCCGGNTATCNNTAATGGTATAATTCCCTTAAANTGAACCATTTNCNCTTTTTATCCCAATT]




>consensus_1765#1
AGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAAGTAACGGCAGTGC
AATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTAAATGACCAAACCG
CAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAAAGCTCCGAATCGC
CAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAAGTGTATGGGGTCT
TAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACNGTGACNACTGCCT
TCAGGTTTCAGANTCCTTCNAAGCAACACTGATACCTCCCAAATATATAGCTAATGAAAC
NAAATCCCGGNTATCNNTAATGGTATAATTCCCTTAAANTGAACCATTTNCNCTTTTTAT
CCCAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1765#0      AGTTTCCGAATGGAGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAA 60
consensus_1765#1      -------------AGACAAAACTTTTAGGGAATTTGTCAAGAGTGTCATCCAACCCAAAA 47
                                   ***********************************************

consensus_1765#0      GTAACGACAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTA 120
consensus_1765#1      GTAACGGCAGTGCAATGTATTGATTCGGATGGCCTCTGTATTGCCTCTCATGGGACTGTA 107
                      ****** *****************************************************

consensus_1765#0      AATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAA 180
consensus_1765#1      AATGACCAAACCGCAGGAGTTCTCAGTAGCATATATAAACATGCAGCAGGTATTGAAGAA 167
                      ************************************************************

consensus_1765#0      AGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAA 240
consensus_1765#1      AGCTCCGAATCGCCAGTTTTAATAATTGAATTTGAGTCAAAATCAAGTATTTTGTGTGAA 227
                      ************************************************************

consensus_1765#0      GTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACG 300
consensus_1765#1      GTGTATGGGGTCTTAACTGTTGTTCATAAGAATCAGTGACGCCGCATCAATGGTCATACN 287
                      *********************************************************** 

consensus_1765#0      GTGACGACTGCCTTCAGGTTTCAGAGTCCTTCGAAGCAACACTGATACCTCC-AAATATA 359
consensus_1765#1      GTGACNACTGCCTTCAGGTTTCAGANTCCTTCNAAGCAACACTGATACCTCCCAAATATA 347
                      ***** ******************* ****** ******************* *******

consensus_1765#0      TAGCTAATGAA-CAAAATCCCGGCTATCATTATGCTAATGACCAACTGTCAAATATCCCA 418
consensus_1765#1      TAGCTAATGAAACNAAATCCCGGNTATCNNTAATGGTATAATTCCCT-TAAANTGAACCA 406
                      *********** * ********* ****  **     ** *    ** * ** *   ***

consensus_1765#0      GAGAAAATACATAACCTCAATGACCTGAAACGAAAAGAACACCAGTGATTCGCTTGATGT 478
consensus_1765#1      TTTNCNCTTTTTATCCCAATT--------------------------------------- 427
                             *   ** **  * *                                       

consensus_1765#0      GCCTATGGCCTTGTGATCTTCACTATCCTCANATAGACTGCAGTTGCCGCTTACTCATTT 538
consensus_1765#1      ------------------------------------------------------------
                                                                                  

consensus_1765#0      CCTTCTGATTGCAAACACCGTTGAGATTCATATCATAACAGTTATTGNAGTTGTCAATTA 598
consensus_1765#1      ------------------------------------------------------------
                                                                                  

consensus_1765#0      ACGGAGCGGAGCTA 612
consensus_1765#1      --------------