These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_178#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [AAAGCCTTCTGTGATAGCCTGTACGATTTTGATTATGACCAACTGAGTATAAACAATTTTCTGTGTATTTCCCTATTTTATTTGTTTGCACAAAATACCCTACTACTACAAGTTGGAAGTTCAGTTCTTGCACATTCATAAAGCACATTTTTACAATCCACCGTACCAACATGTTAAAATACATCCAATAAACAGAAATAAAATTAATATAATCACGCGTAAATCATATATCGTTTCATTTTTATCCTGGACCCTTCAAGTTATCTTTCAAAAACCACCCAAAAAAGGCTCCATCCTAACCGGTATTAATCCGATCTTGGTGGTCAATTATAATTTTC] [+] EMBL AW146541 [AAAGCCTTCTGTGATAGCCTGTACGATTTTGATTATGACCAACTGAGTATAAACAATTTTCTGTGTATTTCCCTATTTTATTTGTTTGCACAAAATACCCTACTACTACAAGTTGGAAGTTCAGTTCTTGCACATTCATAAAGCACATTTTTACAATCCACCGTACCAACATGTTAAAATACATCCAATAAACAGAAATAAAATTAATATAATCACGCGTAAATCATATATCGTTTCATTTTTATCCTGGACCCTTCAAGTTATCTTTCAAAAACCACCCAAAAAAGGCTCCATCCTAACCGGTATTAATCCGATCTTGGTGGTCAATTATAATTTTC] consensusID : consensus_178#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [CCACCGTACCAACATGTTAAAATACATCCAATAAACAGAAATAAAATTAATATAATCACGCGTAAATCATATATCGTTTCATTTTTATCTTGAACCCTTCAAGTTATCTTTCAAAAACAACACAAAAAAGCATCAATCATAACCGGATATTAATCCGAAATCTTGTTTGTTCATTTATAATTTTTCTCTTTAAATGTACCATTTATCTTCGTAGATTTGCCGCCCATT] [-] EMBL CD181765 [CCACCGTACCAACATGTTAAAATACATCCAATAAACAGAAATAAAATTAATATAATCACGCGTAAATCATATATCGTTTCATTTTTATCTTGAACCCTTCAAGTTATCTTTCAAAAACAACACAAAAAAGCATCAATCATAACCGGATATTAATCCGAAATCTTGTTTGTTCATTTATAATTTTTCTCTTTAAATGTACCATTTATCTTCGTAGATTTGCCGCCCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_178#0 AAAGCCTTCTGTGATAGCCTGTACGATTTTGATTATGACCAACTGAGTATAAACAATTTT 60 consensus_178#1 ------------------------------------------------------------ consensus_178#0 CTGTGTATTTCCCTATTTTATTTGTTTGCACAAAATACCCTACTACTACAAGTTGGAAGT 120 consensus_178#1 ------------------------------------------------------------ consensus_178#0 TCAGTTCTTGCACATTCATAAAGCACATTTTTACAATCCACCGTACCAACATGTTAAAAT 180 consensus_178#1 -------------------------------------CCACCGTACCAACATGTTAAAAT 23 *********************** consensus_178#0 ACATCCAATAAACAGAAATAAAATTAATATAATCACGCGTAAATCATATATCGTTTCATT 240 consensus_178#1 ACATCCAATAAACAGAAATAAAATTAATATAATCACGCGTAAATCATATATCGTTTCATT 83 ************************************************************ consensus_178#0 TTTATCCTGGACCCTTCAAGTTATCTTTCAAAAACCACCCAAAAAAGGCTCCATCCTAAC 300 consensus_178#1 TTTATCTTGAACCCTTCAAGTTATCTTTCAAAAACAACACAAAAAAGCATCAATCATAAC 143 ****** ** ************************* ** ******** ** *** **** consensus_178#0 CGG-TATTAATCCGA--TCTTGGTGGT-CAATTATAATTTTC------------------ 338 consensus_178#1 CGGATATTAATCCGAAATCTTGTTTGTTCATTTATAATTTTTCTCTTTAAATGTACCATT 203 *** *********** ***** * ** ** ********** consensus_178#0 ------------------------- consensus_178#1 TATCTTCGTAGATTTGCCGCCCATT 228 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||