cluster # 1783

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Schistosoma mansoni
cluster # 1783 cluster # 1783 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1783#0 length = 286 sequences # 1

consensus_1783#1 length = 206 sequences # 1

consensusID : consensus_1783#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [ATACANCTAATAAAAAACATGACCTATCATGTAAAGTCATTGTATGTACTATGTATTATGTTCACTTTCACACACACACACACATTGTCAACATGACTTATTTAGGCTCTCATTCTATTTCACTGTTATTTCCTCTTAATTCTATATGATTGNGACATATATGTNATATAGTCCACTGTATATCACTCTGGTTGNGNATCACTATTTCATGGTATCTNCANACCTTCTTTGGCAAGTCTTTCANCATGTTACTGATCTGATTCATNGTCGTAGCCANGTAAGAAAT]

[+] EMBL SM708                [ATACANCTAATAAAAAACATGACCTATCATGTAAAGTCATTGTATGTACTATGTATTATGTTCACTTTCACACACACACACACATTGTCAACATGACTTATTTAGGCTCTCATTCTATTTCACTGTTATTTCCTCTTAATTCTATATGATTGNGACATATATGTNATATAGTCCACTGTATATCACTCTGGTTGNGNATCACTATTTCATGGTATCTNCANACCTTCTTTGGCAAGTCTTTCANCATGTTACTGATCTGATTCATNGTCGTAGCCANGTAAGAAAT]




>consensus_1783#0
ATACANCTAATAAAAAACATGACCTATCATGTAAAGTCATTGTATGTACTATGTATTATG
TTCACTTTCACACACACACACACATTGTCAACATGACTTATTTAGGCTCTCATTCTATTT
CACTGTTATTTCCTCTTAATTCTATATGATTGNGACATATATGTNATATAGTCCACTGTA
TATCACTCTGGTTGNGNATCACTATTTCATGGTATCTNCANACCTTCTTTGGCAAGTCTT
TCANCATGTTACTGATCTGATTCATNGTCGTAGCCANGTAAGAAAT

consensusID : consensus_1783#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [GTTTNTGGTTTCTCTCTTTCNCTCTCTAATTATACAACCTAATAAAAAANCATTGACCTATCATGTAAAAGTCATATTGTATGTACTATGTATTTATGTTCACTTTCACACACACACACACACTTGTCAACATGACTTATTTATGGCTCTCATTCTATTTCACTGTTATTTNCTCTTAATTCTATATGATTTGTTGATCATATATG]

[+] EMBL SMAA69079            [GTTTNTGGTTTCTCTCTTTCNCTCTCTAATTATACAACCTAATAAAAAANCATTGACCTATCATGTAAAAGTCATATTGTATGTACTATGTATTTATGTTCACTTTCACACACACACACACACTTGTCAACATGACTTATTTATGGCTCTCATTCTATTTCACTGTTATTTNCTCTTAATTCTATATGATTTGTTGATCATATATG]




>consensus_1783#1
GTTTNTGGTTTCTCTCTTTCNCTCTCTAATTATACAACCTAATAAAAAANCATTGACCTA
TCATGTAAAAGTCATATTGTATGTACTATGTATTTATGTTCACTTTCACACACACACACA
CACTTGTCAACATGACTTATTTATGGCTCTCATTCTATTTCACTGTTATTTNCTCTTAAT
TCTATATGATTTGTTGATCATATATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1783#0      -------------------------------ATACANC-TAATAAAAAACA--TGACCTA 26
consensus_1783#1      GTTTNTGGTTTCTCTCTTTCNCTCTCTAATTATACAACCTAATAAAAAANCATTGACCTA 60
                                                     ***** * **********    *******

consensus_1783#0      TCATGTAAA-GTCAT--TGTATGTACTATGTATT-ATGTTCACTTTCACACACACACACA 82
consensus_1783#1      TCATGTAAAAGTCATATTGTATGTACTATGTATTTATGTTCACTTTCACACACACACACA 120
                      ********* *****  ***************** *************************

consensus_1783#0      CA-TTGTCAACATGACTTATTTA-GGCTCTCATTCTATTTCACTGTTATTTCCTCTTAAT 140
consensus_1783#1      CACTTGTCAACATGACTTATTTATGGCTCTCATTCTATTTCACTGTTATTTNCTCTTAAT 180
                      ** ******************** *************************** ********

consensus_1783#0      TCTATATGATTGNGACAT-ATATGTNATATAGTCCACTGTATATCACTCTGGTTGNGNAT 199
consensus_1783#1      TCTATATGATTTGTTGATCATATATG---------------------------------- 206
                      ***********     ** **** *                                   

consensus_1783#0      CACTATTTCATGGTATCTNCANACCTTCTTTGGCAAGTCTTTCANCATGTTACTGATCTG 259
consensus_1783#1      ------------------------------------------------------------
                                                                                  

consensus_1783#0      ATTCATNGTCGTAGCCANGTAAGAAAT 286
consensus_1783#1      ---------------------------