These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1783#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [ATACANCTAATAAAAAACATGACCTATCATGTAAAGTCATTGTATGTACTATGTATTATGTTCACTTTCACACACACACACACATTGTCAACATGACTTATTTAGGCTCTCATTCTATTTCACTGTTATTTCCTCTTAATTCTATATGATTGNGACATATATGTNATATAGTCCACTGTATATCACTCTGGTTGNGNATCACTATTTCATGGTATCTNCANACCTTCTTTGGCAAGTCTTTCANCATGTTACTGATCTGATTCATNGTCGTAGCCANGTAAGAAAT] [+] EMBL SM708 [ATACANCTAATAAAAAACATGACCTATCATGTAAAGTCATTGTATGTACTATGTATTATGTTCACTTTCACACACACACACACATTGTCAACATGACTTATTTAGGCTCTCATTCTATTTCACTGTTATTTCCTCTTAATTCTATATGATTGNGACATATATGTNATATAGTCCACTGTATATCACTCTGGTTGNGNATCACTATTTCATGGTATCTNCANACCTTCTTTGGCAAGTCTTTCANCATGTTACTGATCTGATTCATNGTCGTAGCCANGTAAGAAAT] consensusID : consensus_1783#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [GTTTNTGGTTTCTCTCTTTCNCTCTCTAATTATACAACCTAATAAAAAANCATTGACCTATCATGTAAAAGTCATATTGTATGTACTATGTATTTATGTTCACTTTCACACACACACACACACTTGTCAACATGACTTATTTATGGCTCTCATTCTATTTCACTGTTATTTNCTCTTAATTCTATATGATTTGTTGATCATATATG] [+] EMBL SMAA69079 [GTTTNTGGTTTCTCTCTTTCNCTCTCTAATTATACAACCTAATAAAAAANCATTGACCTATCATGTAAAAGTCATATTGTATGTACTATGTATTTATGTTCACTTTCACACACACACACACACTTGTCAACATGACTTATTTATGGCTCTCATTCTATTTCACTGTTATTTNCTCTTAATTCTATATGATTTGTTGATCATATATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1783#0 -------------------------------ATACANC-TAATAAAAAACA--TGACCTA 26 consensus_1783#1 GTTTNTGGTTTCTCTCTTTCNCTCTCTAATTATACAACCTAATAAAAAANCATTGACCTA 60 ***** * ********** ******* consensus_1783#0 TCATGTAAA-GTCAT--TGTATGTACTATGTATT-ATGTTCACTTTCACACACACACACA 82 consensus_1783#1 TCATGTAAAAGTCATATTGTATGTACTATGTATTTATGTTCACTTTCACACACACACACA 120 ********* ***** ***************** ************************* consensus_1783#0 CA-TTGTCAACATGACTTATTTA-GGCTCTCATTCTATTTCACTGTTATTTCCTCTTAAT 140 consensus_1783#1 CACTTGTCAACATGACTTATTTATGGCTCTCATTCTATTTCACTGTTATTTNCTCTTAAT 180 ** ******************** *************************** ******** consensus_1783#0 TCTATATGATTGNGACAT-ATATGTNATATAGTCCACTGTATATCACTCTGGTTGNGNAT 199 consensus_1783#1 TCTATATGATTTGTTGATCATATATG---------------------------------- 206 *********** ** **** * consensus_1783#0 CACTATTTCATGGTATCTNCANACCTTCTTTGGCAAGTCTTTCANCATGTTACTGATCTG 259 consensus_1783#1 ------------------------------------------------------------ consensus_1783#0 ATTCATNGTCGTAGCCANGTAAGAAAT 286 consensus_1783#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||