cluster # 179

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 179 cluster # 179 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_179#0 length = 322 sequences # 1

consensus_179#1 length = 154 sequences # 1

consensusID : consensus_179#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence

                              [ATTAGCAAGTGACAAAATAAAGATATAAGCATAAATCTCGTTACAAATCTTACTTGATAGTCTGAAATACCCTGAGAAAAAAGCAGTGAATCAGAAGCACACCCTGAGCACTCATTTGAACCAGTCACAGGGTAAATAATCTGACAACACGGAAGACCAAATGGTGTAGACATTTTGAAAATCAATTGATTCCATTCTGACATAGTAATCATCCTATAGAAATTTTTATGCTGAATCGAAGGAGGAAAAGGATGAAATGATAAAGAACCACCAAGTTGCAACTGAGACGTTATTGGAGTAGAAGCATTATTTTGATTTACTG]

[+] EMBL CD199674             [ATTAGCAAGTGACAAAATAAAGATATAAGCATAAATCTCGTTACAAATCTTACTTGATAGTCTGAAATACCCTGAGAAAAAAGCAGTGAATCAGAAGCACACCCTGAGCACTCATTTGAACCAGTCACAGGGTAAATAATCTGACAACACGGAAGACCAAATGGTGTAGACATTTTGAAAATCAATTGATTCCATTCTGACATAGTAATCATCCTATAGAAATTTTTATGCTGAATCGAAGGAGGAAAAGGATGAAATGATAAAGAACCACCAAGTTGCAACTGAGACGTTATTGGAGTAGAAGCATTATTTTGATTTACTG]




>consensus_179#0
ATTAGCAAGTGACAAAATAAAGATATAAGCATAAATCTCGTTACAAATCTTACTTGATAG
TCTGAAATACCCTGAGAAAAAAGCAGTGAATCAGAAGCACACCCTGAGCACTCATTTGAA
CCAGTCACAGGGTAAATAATCTGACAACACGGAAGACCAAATGGTGTAGACATTTTGAAA
ATCAATTGATTCCATTCTGACATAGTAATCATCCTATAGAAATTTTTATGCTGAATCGAA
GGAGGAAAAGGATGAAATGATAAAGAACCACCAAGTTGCAACTGAGACGTTATTGGAGTA
GAAGCATTATTTTGATTTACTG

consensusID : consensus_179#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 154
fasta sequence

                              [CTTAATTCACTGGTATCTATGCATGCATCACGAGCTAACCATTTTGTAGCAGTGTGACTAGACTGTTTAACTAATTTACAAGGAGCAGATATTTGATAGTCTGAAATACCCTGAGAAAAAAGCAGTGAATCAGAAGCACACCCTGAGCACTCAT]

[+] EMBL CD129088             [CTTAATTCACTGGTATCTATGCATGCATCACGAGCTAACCATTTTGTAGCAGTGTGACTAGACTGTTTAACTAATTTACAAGGAGCAGATATTTGATAGTCTGAAATACCCTGAGAAAAAAGCAGTGAATCAGAAGCACACCCTGAGCACTCAT]




>consensus_179#1
CTTAATTCACTGGTATCTATGCATGCATCACGAGCTAACCATTTTGTAGCAGTGTGACTA
GACTGTTTAACTAATTTACAAGGAGCAGATATTTGATAGTCTGAAATACCCTGAGAAAAA
AGCAGTGAATCAGAAGCACACCCTGAGCACTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_179#0      -----------------------------ATTAGCAAGTGACAAAATAAAGATATAAGCA 31
consensus_179#1      CTTAATTCACTGGTATCTATGCATGCATCACGAGCTAACCATTTTGTAGCAGTGTGACTA 60
                                                  *  *** *   *     **    * * *  *

consensus_179#0      TA------AATCTCGTTACAAATCT----TACTTGATAGTCTGAAATACCCTGAGAAAAA 81
consensus_179#1      GACTGTTTAACTAATTTACAAGGAGCAGATATTTGATAGTCTGAAATACCCTGAGAAAAA 120
                      *      **     ******        ** ****************************

consensus_179#0      AGCAGTGAATCAGAAGCACACCCTGAGCACTCATTTGAACCAGTCACAGGGTAAATAATC 141
consensus_179#1      AGCAGTGAATCAGAAGCACACCCTGAGCACTCAT-------------------------- 154
                     **********************************                          

consensus_179#0      TGACAACACGGAAGACCAAATGGTGTAGACATTTTGAAAATCAATTGATTCCATTCTGAC 201
consensus_179#1      ------------------------------------------------------------
                                                                                 

consensus_179#0      ATAGTAATCATCCTATAGAAATTTTTATGCTGAATCGAAGGAGGAAAAGGATGAAATGAT 261
consensus_179#1      ------------------------------------------------------------
                                                                                 

consensus_179#0      AAAGAACCACCAAGTTGCAACTGAGACGTTATTGGAGTAGAAGCATTATTTTGATTTACT 321
consensus_179#1      ------------------------------------------------------------
                                                                                 

consensus_179#0      G 322
consensus_179#1      -