cluster # 1791

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Schistosoma mansoni
cluster # 1791 cluster # 1791 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1791#0 length = 313 sequences # 1

consensus_1791#1 length = 198 sequences # 1

consensusID : consensus_1791#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [ATTGCTCAAATTTCCTTTGACTTTCATAAGCAAATGAAACTTAAATAAAACATGTAGCCAACTTGTTGAAAAATCTACTTGCAAGGATTATTTACGATGACTTCGTATTCCCTGATAGAAGCGGGCTCAATTGTTATGCTTCGAGCCATAGAACTTGAGAAACAATTAAAATTTACTGAAAGTTTAACATGCTATGAAGAAAGTATTGGTTTATTCATCAAAGCTCTTCGTTCTATTCCTGATAATACACAACCAGAATTNCAAGACAGATTCAGGCTGAAAGTTTCAGAGTATATAACCCATGCAGAAAACT]

[+] EMBL CD193979             [ATTGCTCAAATTTCCTTTGACTTTCATAAGCAAATGAAACTTAAATAAAACATGTAGCCAACTTGTTGAAAAATCTACTTGCAAGGATTATTTACGATGACTTCGTATTCCCTGATAGAAGCGGGCTCAATTGTTATGCTTCGAGCCATAGAACTTGAGAAACAATTAAAATTTACTGAAAGTTTAACATGCTATGAAGAAAGTATTGGTTTATTCATCAAAGCTCTTCGTTCTATTCCTGATAATACACAACCAGAATTNCAAGACAGATTCAGGCTGAAAGTTTCAGAGTATATAACCCATGCAGAAAACT]




>consensus_1791#0
ATTGCTCAAATTTCCTTTGACTTTCATAAGCAAATGAAACTTAAATAAAACATGTAGCCA
ACTTGTTGAAAAATCTACTTGCAAGGATTATTTACGATGACTTCGTATTCCCTGATAGAA
GCGGGCTCAATTGTTATGCTTCGAGCCATAGAACTTGAGAAACAATTAAAATTTACTGAA
AGTTTAACATGCTATGAAGAAAGTATTGGTTTATTCATCAAAGCTCTTCGTTCTATTCCT
GATAATACACAACCAGAATTNCAAGACAGATTCAGGCTGAAAGTTTCAGAGTATATAACC
CATGCAGAAAACT

consensusID : consensus_1791#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 198
fasta sequence

                              [CAAAACTNNCGCAGAGCAATTACTTTCNCTATCNCNTTGATCTAATTTCCGTTGACTTTCATAAGCAAATGAAACTTAAATAAAACATGTAGCCAGNTGGTTGNAANATTCTACTNGNAAGGATTATNGACGATGNACTTCGCNCTNCCCNGATAGANGCGGNNTCANTTGTTATGCTTCGAGNCATAGGAACTTGAA]

[+] EMBL SM6912               [CAAAACTNNCGCAGAGCAATTACTTTCNCTATCNCNTTGATCTAATTTCCGTTGACTTTCATAAGCAAATGAAACTTAAATAAAACATGTAGCCAGNTGGTTGNAANATTCTACTNGNAAGGATTATNGACGATGNACTTCGCNCTNCCCNGATAGANGCGGNNTCANTTGTTATGCTTCGAGNCATAGGAACTTGAA]




>consensus_1791#1
CAAAACTNNCGCAGAGCAATTACTTTCNCTATCNCNTTGATCTAATTTCCGTTGACTTTC
ATAAGCAAATGAAACTTAAATAAAACATGTAGCCAGNTGGTTGNAANATTCTACTNGNAA
GGATTATNGACGATGNACTTCGCNCTNCCCNGATAGANGCGGNNTCANTTGTTATGCTTC
GAGNCATAGGAACTTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1791#0      -----------------------------------ATTGCTCAAATTTCCTTTGACTTTC 25
consensus_1791#1      CAAAACTNNCGCAGAGCAATTACTTTCNCTATCNCNTTGATCTAATTTCCGTTGACTTTC 60
                                                          *** ** ******* *********

consensus_1791#0      ATAAGCAAATGAAACTTAAATAAAACATGTAGCCAACTTGTTGAAAAAT-CTACTTGCAA 84
consensus_1791#1      ATAAGCAAATGAAACTTAAATAAAACATGTAGCCAGNTGGTTGNAANATTCTACTNGNAA 120
                      ***********************************  * **** ** ** ***** * **

consensus_1791#0      GGATTATTTACGATGA-CTTCGTA-TTCCCTGATAGAAGCGGGCTCAATTGTTATGCTTC 142
consensus_1791#1      GGATTATNGACGATGNACTTCGCNCTNCCCNGATAGANGCGGNNTCANTTGTTATGCTTC 180
                      *******  ******  *****   * *** ****** ****  *** ************

consensus_1791#0      GAGCCATAG-AACTTGAGAAACAATTAAAATTTACTGAAAGTTTAACATGCTATGAAGAA 201
consensus_1791#1      GAGNCATAGGAACTTGAA------------------------------------------ 198
                      *** ***** *******                                           

consensus_1791#0      AGTATTGGTTTATTCATCAAAGCTCTTCGTTCTATTCCTGATAATACACAACCAGAATTN 261
consensus_1791#1      ------------------------------------------------------------
                                                                                  

consensus_1791#0      CAAGACAGATTCAGGCTGAAAGTTTCAGAGTATATAACCCATGCAGAAAACT 313
consensus_1791#1      ----------------------------------------------------