These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1791#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence [ATTGCTCAAATTTCCTTTGACTTTCATAAGCAAATGAAACTTAAATAAAACATGTAGCCAACTTGTTGAAAAATCTACTTGCAAGGATTATTTACGATGACTTCGTATTCCCTGATAGAAGCGGGCTCAATTGTTATGCTTCGAGCCATAGAACTTGAGAAACAATTAAAATTTACTGAAAGTTTAACATGCTATGAAGAAAGTATTGGTTTATTCATCAAAGCTCTTCGTTCTATTCCTGATAATACACAACCAGAATTNCAAGACAGATTCAGGCTGAAAGTTTCAGAGTATATAACCCATGCAGAAAACT] [+] EMBL CD193979 [ATTGCTCAAATTTCCTTTGACTTTCATAAGCAAATGAAACTTAAATAAAACATGTAGCCAACTTGTTGAAAAATCTACTTGCAAGGATTATTTACGATGACTTCGTATTCCCTGATAGAAGCGGGCTCAATTGTTATGCTTCGAGCCATAGAACTTGAGAAACAATTAAAATTTACTGAAAGTTTAACATGCTATGAAGAAAGTATTGGTTTATTCATCAAAGCTCTTCGTTCTATTCCTGATAATACACAACCAGAATTNCAAGACAGATTCAGGCTGAAAGTTTCAGAGTATATAACCCATGCAGAAAACT] consensusID : consensus_1791#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence [CAAAACTNNCGCAGAGCAATTACTTTCNCTATCNCNTTGATCTAATTTCCGTTGACTTTCATAAGCAAATGAAACTTAAATAAAACATGTAGCCAGNTGGTTGNAANATTCTACTNGNAAGGATTATNGACGATGNACTTCGCNCTNCCCNGATAGANGCGGNNTCANTTGTTATGCTTCGAGNCATAGGAACTTGAA] [+] EMBL SM6912 [CAAAACTNNCGCAGAGCAATTACTTTCNCTATCNCNTTGATCTAATTTCCGTTGACTTTCATAAGCAAATGAAACTTAAATAAAACATGTAGCCAGNTGGTTGNAANATTCTACTNGNAAGGATTATNGACGATGNACTTCGCNCTNCCCNGATAGANGCGGNNTCANTTGTTATGCTTCGAGNCATAGGAACTTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1791#0 -----------------------------------ATTGCTCAAATTTCCTTTGACTTTC 25 consensus_1791#1 CAAAACTNNCGCAGAGCAATTACTTTCNCTATCNCNTTGATCTAATTTCCGTTGACTTTC 60 *** ** ******* ********* consensus_1791#0 ATAAGCAAATGAAACTTAAATAAAACATGTAGCCAACTTGTTGAAAAAT-CTACTTGCAA 84 consensus_1791#1 ATAAGCAAATGAAACTTAAATAAAACATGTAGCCAGNTGGTTGNAANATTCTACTNGNAA 120 *********************************** * **** ** ** ***** * ** consensus_1791#0 GGATTATTTACGATGA-CTTCGTA-TTCCCTGATAGAAGCGGGCTCAATTGTTATGCTTC 142 consensus_1791#1 GGATTATNGACGATGNACTTCGCNCTNCCCNGATAGANGCGGNNTCANTTGTTATGCTTC 180 ******* ****** ***** * *** ****** **** *** ************ consensus_1791#0 GAGCCATAG-AACTTGAGAAACAATTAAAATTTACTGAAAGTTTAACATGCTATGAAGAA 201 consensus_1791#1 GAGNCATAGGAACTTGAA------------------------------------------ 198 *** ***** ******* consensus_1791#0 AGTATTGGTTTATTCATCAAAGCTCTTCGTTCTATTCCTGATAATACACAACCAGAATTN 261 consensus_1791#1 ------------------------------------------------------------ consensus_1791#0 CAAGACAGATTCAGGCTGAAAGTTTCAGAGTATATAACCCATGCAGAAAACT 313 consensus_1791#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||