These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1806#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [CCGGGTTCGAAATCTCTCTTTGTGATTGTCCAGTTGTCTTAGTTGGTAACTATTACTGTTTGTTTTCAATTGGCTTTATCGTAAAGCAATTCTAAAACTTAGTTTGGTTAAATTATCTTGAATATTCCAAAGTTTATATGGCTTCAGCGCAAGTTTATCGTTTCCAACAACGTATATCAAATCTTCAATCACATCATGAACTTGCATCTATTCGACATTGCGAGGCTGTTAGTAACTATATCAGTCAAAACAATGAATTAATGAAATCTTTGCTGGCTCATTTAAAGGCTCCGGATAAAAGTGTAAAAAGAACTAAGAGGATTACAAAACCTCGGACAACACATCCACAGTTAGCGAAATCTTCACGTTTTTCTGCCAAGTCATATGCTACACAGTCAACTGTCGAGCAATTGAACGCCATACATCACCATTCATTATCCAGGCAAACAGACTTTGTAAACCAATGTTTACCTGAAGAAACATGGAACAATTTCGGTACACCAGTGAATAATGATGATCCTTTTGTGTGTAATTCCAAAGAACCGATATTTCCACCGCCGACATATACAGAACCAGGTTTAAATTATGAACNCAGCATTCTT] [+] EMBL CD078984 [CCGGGTTCGAAATCTCTCTTTGTGATTGTCCAGTTGTCTTAGTTGGTAACTATTACTGTTTGTTTTCAATTGGCTTTATCGTAAAGCAATTCTAAAACTTAGTTTGGTTAAATTATCTTGAATATTCCAAAGTTTATATGGCTTCAGCGCAAGTTTATCGTTTCCAACAACGTATATCAAATCTTCAATCACATCATGAACTTGCATCTATTCGACATTGCGAGGCTGTTAGTAACTATATCAGTCAAAACAATGAATTAATGAAATCTTTGCTGGCTCATTTAAAGGCTCCGGATAAAAGTGTAAAAAGAACTAAGAGGATTACAAAACCTCGGACAACACATCCACAGTTAGCGAAATCTTCACGTTTTTCTGCCAAGTCATATGCTACACAGTCAACTGTCGAGCAATTGAACGCCATACATCACCATTCATTATCCAGGCAAACAGACTTTGTAAACCAATGTTTACCTGAAGAAACATGGAACAATTTCGGTACACCAGTGAATAATGATGATCCTTTTGTGTGTAATTCCAAAGAACCGATATTTCCACCGCCGACATATACAGAACCAGGTTTAAATTATGAACNCAGCATTCTT] consensusID : consensus_1806#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [TAAGCTGTCGGTTTATATCTCTTGATTTTTCCAGCTATCCCCATTAACGCTTCCCATATATATATATATATATATATATATATATATATATAAAGTGCTTCCAGGCTAGACACAAACNACTAAAATTGGAGTGCACNAGCTGTCAAGTTTGTTAGGCCGATAGACTTCGCGCTAACAATGTCTACGTATCAATTTTCGGTGATATATGTTTCATACTGAGGACTCTGGCTTATTTGTTTTGATGGGTCAATGGTTTCAAGGGACCGATTATATGCAGTGTAAGCGGAAACAGTCTATTTGGAATAGAATTTAACCCATGAAAATCACAATGTCTTGGAACATTTTGTGTTTCTTATTAATTCTAAAACTTAGTTNGGTNAAATTATCTTGAATATTCCAAAGTTTATATGGCTTCAGCGCAGGTNTATCGTTTCCAACAACGTATATCAAATCTTCAATCACATCATGAAACTTGCATCTATTCGACATTGCGAGGCTGTTAGTAACTATATCAGTCAAAACAATGAATTAATGAAATCTTGCTGGCTCATTTAAAGGC] [+] EMBL AI111131 [TAAGCTGTCGGTTTATATCTCTTGATTTTTCCAGCTATCCCCATTAACGCTTCCCATATATATATATATATATATATATATATATATATATAAAGTGCTTCCAGGCTAGACACAAACNACTAAAATTGGAGTGCACNAGCTGTCAAGTTTGTTAGGCCGATAGACTTCGCGCTAACAATGTCTACGTATCAATTTTCGGTGATATATGTTTCATACTGAGGACTCTGGCTTATTTGTTTTGATGGGTCAATGGTTTCAAGGGACCGATTATATGCAGTGTAAGCGGAAACAGTCTATTTGGAATAGAATTTAACCCATGAAAATCACAATGTCTTGGAACATTTTGTGTTTCTTATTAATTCTAAAACTTAGTTNGGTNAAATTATCTTGAATATTCCAAAGTTTATATGGCTTCAGCGCAGGTNTATCGTTTCCAACAACGTATATCAAATCTTCAATCACATCATGAAACTTGCATCTATTCGACATTGCGAGGCTGTTAGTAACTATATCAGTCAAAACAATGAATTAATGAAATCTTGCTGGCTCATTTAAAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1806#0 CCGGGT-TCGAAATCTCTCTTTGTGATTGTCCAGTTGTCTTAGTTGGTAACTATTACTGT 59 consensus_1806#1 TAAGCTGTCGGTTTATATCTCTTGATTTTTCCAGCTATCCCCAT---TAACGCTTCCCAT 57 * * *** * * *** * ** ***** * ** * **** ** * * consensus_1806#0 TTGTTTTCAATTGGCTTTATCGTAAAGCAATTCTAAAACTTAGTTTGGTTAAATTATCTT 119 consensus_1806#1 ATATATATATATATATATATATATATATATATATAAAGTGCTTCCAGGCTAGA----CAC 113 * * * * * * *** * * * **** ** ** * * consensus_1806#0 GAATATTCCAAAGTTTATATGGCTTCAGCG-CAAGTTTATCGTTTCCAACAACGTA---- 174 consensus_1806#1 AAACNA-CTAAAATTGGAGTGCACNAGCTGTCAAGTTTGTTAGGCCGATAGACTTCGCGC 172 ** * *** ** ** * ******* * * * ** * consensus_1806#0 TATCAAATCTTCAATCACATCATGAACTTGCATCTATTCGACATTGCGAGGCTGTTAGTA 234 consensus_1806#1 TAACAATGTCTACGTATCAATTTTCGGTGATATATGTTTCATACTGAG-GACTCTGGCTT 231 ** *** * * ** * * ** * ** * * ** * * ** * * consensus_1806#0 ACTATATCAGTCAAAACAATGAATTAATGAAATC-----TTTGCTGGCTCATTTAAAGGC 289 consensus_1806#1 ATTTGTTTTGATGGGTCAATGGTTTCAAGGGACCGATTATATGCAGTGTAAGCGGAAACA 291 * * * * ***** ** * * * * * *** * * * ** consensus_1806#0 TCCGGATAAAAGTGTAAAAAGAACTAAGAGGATTACAAAACCTCGGACAACACATCCACA 349 consensus_1806#1 GTCTATTTGGAATAGAATTTAACCCATGAAAATCACAATGTCTTGGAACATTTTGTGTTT 351 * * * * ** * * * ** ** **** ** *** * consensus_1806#0 GTTAGCGAAATCTTCACGTTTTTCTGCCAAGTCATATGCTACACAGTCAACTGTCGAGCA 409 consensus_1806#1 CTTATTAATTCTAAAACTTAGTTNGGTNAAATTATCTTGAATATTCCAAAGTTTATATGG 411 *** * ** * ** * ** * ** * * * ** * * * consensus_1806#0 ATTGAACGCCATACATCACCATTCATTATCCAGGCAAACAGACTTTGTAAACCAATGTTT 469 consensus_1806#1 CTTCAGCGCAG---------GTNTATCGTTTCCAACAACGTATATC--AAATCTTCAATC 460 ** * *** * ** * *** * * *** * * consensus_1806#0 ACCTGAAGAAACATGGAACAATTTCGGTACACCAGTGAATAATGATGATCCTTTTGTGTG 529 consensus_1806#1 ACATCATGAAACTTGCATCTATT-CGACATTGCGAGGC----TGTTAGTAACTATATCAG 515 ** * * ***** ** * * *** ** * * * ** * * * * * * consensus_1806#0 TAATTCCAAAGAACCGATATTTCCACCGCCGACATATACAGAACCAGGTTTAAATTATGA 589 consensus_1806#1 TCAAAACAATGAATTAATGAAATC-TTGCTGGCTCATTTAAAGGC--------------- 559 * * *** *** ** * ** * * ** * * * consensus_1806#0 ACNCAGCATTCTT 602 consensus_1806#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||