cluster # 1806

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Schistosoma mansoni
cluster # 1806 cluster # 1806 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1806#0 length = 602 sequences # 1

consensus_1806#1 length = 559 sequences # 1

consensusID : consensus_1806#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [CCGGGTTCGAAATCTCTCTTTGTGATTGTCCAGTTGTCTTAGTTGGTAACTATTACTGTTTGTTTTCAATTGGCTTTATCGTAAAGCAATTCTAAAACTTAGTTTGGTTAAATTATCTTGAATATTCCAAAGTTTATATGGCTTCAGCGCAAGTTTATCGTTTCCAACAACGTATATCAAATCTTCAATCACATCATGAACTTGCATCTATTCGACATTGCGAGGCTGTTAGTAACTATATCAGTCAAAACAATGAATTAATGAAATCTTTGCTGGCTCATTTAAAGGCTCCGGATAAAAGTGTAAAAAGAACTAAGAGGATTACAAAACCTCGGACAACACATCCACAGTTAGCGAAATCTTCACGTTTTTCTGCCAAGTCATATGCTACACAGTCAACTGTCGAGCAATTGAACGCCATACATCACCATTCATTATCCAGGCAAACAGACTTTGTAAACCAATGTTTACCTGAAGAAACATGGAACAATTTCGGTACACCAGTGAATAATGATGATCCTTTTGTGTGTAATTCCAAAGAACCGATATTTCCACCGCCGACATATACAGAACCAGGTTTAAATTATGAACNCAGCATTCTT]

[+] EMBL CD078984             [CCGGGTTCGAAATCTCTCTTTGTGATTGTCCAGTTGTCTTAGTTGGTAACTATTACTGTTTGTTTTCAATTGGCTTTATCGTAAAGCAATTCTAAAACTTAGTTTGGTTAAATTATCTTGAATATTCCAAAGTTTATATGGCTTCAGCGCAAGTTTATCGTTTCCAACAACGTATATCAAATCTTCAATCACATCATGAACTTGCATCTATTCGACATTGCGAGGCTGTTAGTAACTATATCAGTCAAAACAATGAATTAATGAAATCTTTGCTGGCTCATTTAAAGGCTCCGGATAAAAGTGTAAAAAGAACTAAGAGGATTACAAAACCTCGGACAACACATCCACAGTTAGCGAAATCTTCACGTTTTTCTGCCAAGTCATATGCTACACAGTCAACTGTCGAGCAATTGAACGCCATACATCACCATTCATTATCCAGGCAAACAGACTTTGTAAACCAATGTTTACCTGAAGAAACATGGAACAATTTCGGTACACCAGTGAATAATGATGATCCTTTTGTGTGTAATTCCAAAGAACCGATATTTCCACCGCCGACATATACAGAACCAGGTTTAAATTATGAACNCAGCATTCTT]




>consensus_1806#0
CCGGGTTCGAAATCTCTCTTTGTGATTGTCCAGTTGTCTTAGTTGGTAACTATTACTGTT
TGTTTTCAATTGGCTTTATCGTAAAGCAATTCTAAAACTTAGTTTGGTTAAATTATCTTG
AATATTCCAAAGTTTATATGGCTTCAGCGCAAGTTTATCGTTTCCAACAACGTATATCAA
ATCTTCAATCACATCATGAACTTGCATCTATTCGACATTGCGAGGCTGTTAGTAACTATA
TCAGTCAAAACAATGAATTAATGAAATCTTTGCTGGCTCATTTAAAGGCTCCGGATAAAA
GTGTAAAAAGAACTAAGAGGATTACAAAACCTCGGACAACACATCCACAGTTAGCGAAAT
CTTCACGTTTTTCTGCCAAGTCATATGCTACACAGTCAACTGTCGAGCAATTGAACGCCA
TACATCACCATTCATTATCCAGGCAAACAGACTTTGTAAACCAATGTTTACCTGAAGAAA
CATGGAACAATTTCGGTACACCAGTGAATAATGATGATCCTTTTGTGTGTAATTCCAAAG
AACCGATATTTCCACCGCCGACATATACAGAACCAGGTTTAAATTATGAACNCAGCATTC
TT

consensusID : consensus_1806#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [TAAGCTGTCGGTTTATATCTCTTGATTTTTCCAGCTATCCCCATTAACGCTTCCCATATATATATATATATATATATATATATATATATATAAAGTGCTTCCAGGCTAGACACAAACNACTAAAATTGGAGTGCACNAGCTGTCAAGTTTGTTAGGCCGATAGACTTCGCGCTAACAATGTCTACGTATCAATTTTCGGTGATATATGTTTCATACTGAGGACTCTGGCTTATTTGTTTTGATGGGTCAATGGTTTCAAGGGACCGATTATATGCAGTGTAAGCGGAAACAGTCTATTTGGAATAGAATTTAACCCATGAAAATCACAATGTCTTGGAACATTTTGTGTTTCTTATTAATTCTAAAACTTAGTTNGGTNAAATTATCTTGAATATTCCAAAGTTTATATGGCTTCAGCGCAGGTNTATCGTTTCCAACAACGTATATCAAATCTTCAATCACATCATGAAACTTGCATCTATTCGACATTGCGAGGCTGTTAGTAACTATATCAGTCAAAACAATGAATTAATGAAATCTTGCTGGCTCATTTAAAGGC]

[+] EMBL AI111131             [TAAGCTGTCGGTTTATATCTCTTGATTTTTCCAGCTATCCCCATTAACGCTTCCCATATATATATATATATATATATATATATATATATATAAAGTGCTTCCAGGCTAGACACAAACNACTAAAATTGGAGTGCACNAGCTGTCAAGTTTGTTAGGCCGATAGACTTCGCGCTAACAATGTCTACGTATCAATTTTCGGTGATATATGTTTCATACTGAGGACTCTGGCTTATTTGTTTTGATGGGTCAATGGTTTCAAGGGACCGATTATATGCAGTGTAAGCGGAAACAGTCTATTTGGAATAGAATTTAACCCATGAAAATCACAATGTCTTGGAACATTTTGTGTTTCTTATTAATTCTAAAACTTAGTTNGGTNAAATTATCTTGAATATTCCAAAGTTTATATGGCTTCAGCGCAGGTNTATCGTTTCCAACAACGTATATCAAATCTTCAATCACATCATGAAACTTGCATCTATTCGACATTGCGAGGCTGTTAGTAACTATATCAGTCAAAACAATGAATTAATGAAATCTTGCTGGCTCATTTAAAGGC]




>consensus_1806#1
TAAGCTGTCGGTTTATATCTCTTGATTTTTCCAGCTATCCCCATTAACGCTTCCCATATA
TATATATATATATATATATATATATATATATAAAGTGCTTCCAGGCTAGACACAAACNAC
TAAAATTGGAGTGCACNAGCTGTCAAGTTTGTTAGGCCGATAGACTTCGCGCTAACAATG
TCTACGTATCAATTTTCGGTGATATATGTTTCATACTGAGGACTCTGGCTTATTTGTTTT
GATGGGTCAATGGTTTCAAGGGACCGATTATATGCAGTGTAAGCGGAAACAGTCTATTTG
GAATAGAATTTAACCCATGAAAATCACAATGTCTTGGAACATTTTGTGTTTCTTATTAAT
TCTAAAACTTAGTTNGGTNAAATTATCTTGAATATTCCAAAGTTTATATGGCTTCAGCGC
AGGTNTATCGTTTCCAACAACGTATATCAAATCTTCAATCACATCATGAAACTTGCATCT
ATTCGACATTGCGAGGCTGTTAGTAACTATATCAGTCAAAACAATGAATTAATGAAATCT
TGCTGGCTCATTTAAAGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1806#0      CCGGGT-TCGAAATCTCTCTTTGTGATTGTCCAGTTGTCTTAGTTGGTAACTATTACTGT 59
consensus_1806#1      TAAGCTGTCGGTTTATATCTCTTGATTTTTCCAGCTATCCCCAT---TAACGCTTCCCAT 57
                         * * ***   * * *** *    ** ***** * **    *   ****  ** *  *

consensus_1806#0      TTGTTTTCAATTGGCTTTATCGTAAAGCAATTCTAAAACTTAGTTTGGTTAAATTATCTT 119
consensus_1806#1      ATATATATATATATATATATATATATATATATATAAAGTGCTTCCAGGCTAGA----CAC 113
                       * * *  *  *   * ***    *   *  * ****         ** ** *    *  

consensus_1806#0      GAATATTCCAAAGTTTATATGGCTTCAGCG-CAAGTTTATCGTTTCCAACAACGTA---- 174
consensus_1806#1      AAACNA-CTAAAATTGGAGTGCACNAGCTGTCAAGTTTGTTAGGCCGATAGACTTCGCGC 172
                       **    * *** **    **        * ******* *     * *   ** *     

consensus_1806#0      TATCAAATCTTCAATCACATCATGAACTTGCATCTATTCGACATTGCGAGGCTGTTAGTA 234
consensus_1806#1      TAACAATGTCTACGTATCAATTTTCGGTGATATATGTTTCATACTGAG-GACTCTGGCTT 231
                      ** ***    *   *  **   *    *   ** * **  * * ** * * ** *   * 

consensus_1806#0      ACTATATCAGTCAAAACAATGAATTAATGAAATC-----TTTGCTGGCTCATTTAAAGGC 289
consensus_1806#1      ATTTGTTTTGATGGGTCAATGGTTTCAAGGGACCGATTATATGCAGTGTAAGCGGAAACA 291
                      * *   *  *      *****  ** * *  * *     * *** *  * *    **   

consensus_1806#0      TCCGGATAAAAGTGTAAAAAGAACTAAGAGGATTACAAAACCTCGGACAACACATCCACA 349
consensus_1806#1      GTCTATTTGGAATAGAATTTAACCCATGAAAATCACAATGTCTTGGAACATTTTGTGTTT 351
                        *   *   * *  **    * * * **  ** ****   ** ***  *          

consensus_1806#0      GTTAGCGAAATCTTCACGTTTTTCTGCCAAGTCATATGCTACACAGTCAACTGTCGAGCA 409
consensus_1806#1      CTTATTAATTCTAAAACTTAGTTNGGTNAAATTATCTTGAATATTCCAAAGTTTATATGG 411
                       ***   *       ** *  **  *  ** * ** *   * *     ** * *  *   

consensus_1806#0      ATTGAACGCCATACATCACCATTCATTATCCAGGCAAACAGACTTTGTAAACCAATGTTT 469
consensus_1806#1      CTTCAGCGCAG---------GTNTATCGTTTCCAACAACGTATATC--AAATCTTCAATC 460
                       ** * ***            *  **  *       ***  *  *   *** *     * 

consensus_1806#0      ACCTGAAGAAACATGGAACAATTTCGGTACACCAGTGAATAATGATGATCCTTTTGTGTG 529
consensus_1806#1      ACATCATGAAACTTGCATCTATT-CGACATTGCGAGGC----TGTTAGTAACTATATCAG 515
                      ** * * ***** ** * * *** **  *   *   *     ** *  *   * * *  *

consensus_1806#0      TAATTCCAAAGAACCGATATTTCCACCGCCGACATATACAGAACCAGGTTTAAATTATGA 589
consensus_1806#1      TCAAAACAATGAATTAATGAAATC-TTGCTGGCTCATTTAAAGGC--------------- 559
                      * *   *** ***   **     *   ** * *  **  * *  *               

consensus_1806#0      ACNCAGCATTCTT 602
consensus_1806#1      -------------