cluster # 1817

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Schistosoma mansoni
cluster # 1817 cluster # 1817 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1817#0 length = 417 sequences # 1

consensus_1817#1 length = 296 sequences # 1

consensusID : consensus_1817#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [CGACTCACATGGGTAAGACAGCGAATTCCTCTACCAGAAATGAAAAAGCCAATTAGGCCTTCAATAATAAAACCTCATAAGAAGATTCAAATTCCAGGTATTTCACCCAATAAAATTCCAGCAAATGAAGAGACATACTGTGAGAACGAACGTATTAGACATTTTGGAGGTGGGGCGTTTCAACAATGCAATATGGTTGGTAGTCATTTTTTGTATGGAGAAGAGCAATTAGGAGGAGCTGCTAGTAATTGGTTTGCTCCAAATGAACATCGTTCTGTTCCAAGATACCCTAATCAATTCGATTCTTATCCAACGGCCACACAGATCAATAATATATCTCAAATACCGGGAAGTGCAGGAAAATCATCAGAAAATGAGCCAGATAATACAGCTAATCATAATGAGTCACCATCAGTT]

[+] EMBL CD132022             [CGACTCACATGGGTAAGACAGCGAATTCCTCTACCAGAAATGAAAAAGCCAATTAGGCCTTCAATAATAAAACCTCATAAGAAGATTCAAATTCCAGGTATTTCACCCAATAAAATTCCAGCAAATGAAGAGACATACTGTGAGAACGAACGTATTAGACATTTTGGAGGTGGGGCGTTTCAACAATGCAATATGGTTGGTAGTCATTTTTTGTATGGAGAAGAGCAATTAGGAGGAGCTGCTAGTAATTGGTTTGCTCCAAATGAACATCGTTCTGTTCCAAGATACCCTAATCAATTCGATTCTTATCCAACGGCCACACAGATCAATAATATATCTCAAATACCGGGAAGTGCAGGAAAATCATCAGAAAATGAGCCAGATAATACAGCTAATCATAATGAGTCACCATCAGTT]




>consensus_1817#0
CGACTCACATGGGTAAGACAGCGAATTCCTCTACCAGAAATGAAAAAGCCAATTAGGCCT
TCAATAATAAAACCTCATAAGAAGATTCAAATTCCAGGTATTTCACCCAATAAAATTCCA
GCAAATGAAGAGACATACTGTGAGAACGAACGTATTAGACATTTTGGAGGTGGGGCGTTT
CAACAATGCAATATGGTTGGTAGTCATTTTTTGTATGGAGAAGAGCAATTAGGAGGAGCT
GCTAGTAATTGGTTTGCTCCAAATGAACATCGTTCTGTTCCAAGATACCCTAATCAATTC
GATTCTTATCCAACGGCCACACAGATCAATAATATATCTCAAATACCGGGAAGTGCAGGA
AAATCATCAGAAAATGAGCCAGATAATACAGCTAATCATAATGAGTCACCATCAGTT

consensusID : consensus_1817#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [CCTCTACCAGAGATGANNNNGCCAATTAGGCCTTCAATAATAAAACCTCATAAGAAGATTCAAATTCCAGGTATTTCACCCAATAAAATTCCAGCAAATGAAGAGACATACTGTGAGAACGAACGTATTAGACATTTTGGAGGTGGGGCGTTNTCAACATGCATATGGGTGGTAGTCATTTTTTGTATGGAGAAAGAGCATTAGGAGGAGCTGCTAGTANTTGGTTTGCTCCAATGAACATCGTTCTGTTCCAAGATCCCCTATCATTCGATTTTTATCACCGCCACCCAAATAAA]

[+] EMBL CD201698             [CCTCTACCAGAGATGANNNNGCCAATTAGGCCTTCAATAATAAAACCTCATAAGAAGATTCAAATTCCAGGTATTTCACCCAATAAAATTCCAGCAAATGAAGAGACATACTGTGAGAACGAACGTATTAGACATTTTGGAGGTGGGGCGTTNTCAACATGCATATGGGTGGTAGTCATTTTTTGTATGGAGAAAGAGCATTAGGAGGAGCTGCTAGTANTTGGTTTGCTCCAATGAACATCGTTCTGTTCCAAGATCCCCTATCATTCGATTTTTATCACCGCCACCCAAATAAA]




>consensus_1817#1
CCTCTACCAGAGATGANNNNGCCAATTAGGCCTTCAATAATAAAACCTCATAAGAAGATT
CAAATTCCAGGTATTTCACCCAATAAAATTCCAGCAAATGAAGAGACATACTGTGAGAAC
GAACGTATTAGACATTTTGGAGGTGGGGCGTTNTCAACATGCATATGGGTGGTAGTCATT
TTTTGTATGGAGAAAGAGCATTAGGAGGAGCTGCTAGTANTTGGTTTGCTCCAATGAACA
TCGTTCTGTTCCAAGATCCCCTATCATTCGATTTTTATCACCGCCACCCAAATAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1817#0      CGACTCACATGGGTAAGACAGCGAATTCCTCTACCAGAAATGAAAAAGCCAATTAGGCCT 60
consensus_1817#1      ---------------------------CCTCTACCAGAGATGANNNNGCCAATTAGGCCT 33
                                                 *********** ****    *************

consensus_1817#0      TCAATAATAAAACCTCATAAGAAGATTCAAATTCCAGGTATTTCACCCAATAAAATTCCA 120
consensus_1817#1      TCAATAATAAAACCTCATAAGAAGATTCAAATTCCAGGTATTTCACCCAATAAAATTCCA 93
                      ************************************************************

consensus_1817#0      GCAAATGAAGAGACATACTGTGAGAACGAACGTATTAGACATTTTGGAGGTGGGGCGTTT 180
consensus_1817#1      GCAAATGAAGAGACATACTGTGAGAACGAACGTATTAGACATTTTGGAGGTGGGGCGTTN 153
                      *********************************************************** 

consensus_1817#0      CAACAATGCAATATGGTTGGTAGTCATTTTTTGTATGGAGAAGAGCAATTAGGAGGAGCT 240
consensus_1817#1      TCAACATGCA-TATGGGTGGTAGTCATTTTTTGTATGGAGAAAGAGCATTAGGAGGAGCT 212
                        *  ***** ***** *************************     *************

consensus_1817#0      GCTAGTAATTGGTTTGCTCCAAATGAACATCGTTCTGTTCCAAGATACCCTAATCAATTC 300
consensus_1817#1      GCTAGTANTTGGTTTGCTCCAA-TGAACATCGTTCTGTTCCAAGATCCCCTA--TCATTC 269
                      ******* ************** *********************** *****    ****

consensus_1817#0      GATTCTTATCCAACGGCCACACAGATCAATAATATATCTCAAATACCGGGAAGTGCAGGA 360
consensus_1817#1      GATTTTTATC--ACCGCCACCCAAATAAA------------------------------- 296
                      **** *****  ** ***** ** ** **                               

consensus_1817#0      AAATCATCAGAAAATGAGCCAGATAATACAGCTAATCATAATGAGTCACCATCAGTT 417
consensus_1817#1      ---------------------------------------------------------