These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [CGACTCACATGGGTAAGACAGCGAATTCCTCTACCAGAAATGAAAAAGCCAATTAGGCCTTCAATAATAAAACCTCATAAGAAGATTCAAATTCCAGGTATTTCACCCAATAAAATTCCAGCAAATGAAGAGACATACTGTGAGAACGAACGTATTAGACATTTTGGAGGTGGGGCGTTTCAACAATGCAATATGGTTGGTAGTCATTTTTTGTATGGAGAAGAGCAATTAGGAGGAGCTGCTAGTAATTGGTTTGCTCCAAATGAACATCGTTCTGTTCCAAGATACCCTAATCAATTCGATTCTTATCCAACGGCCACACAGATCAATAATATATCTCAAATACCGGGAAGTGCAGGAAAATCATCAGAAAATGAGCCAGATAATACAGCTAATCATAATGAGTCACCATCAGTT] [+] EMBL CD132022 [CGACTCACATGGGTAAGACAGCGAATTCCTCTACCAGAAATGAAAAAGCCAATTAGGCCTTCAATAATAAAACCTCATAAGAAGATTCAAATTCCAGGTATTTCACCCAATAAAATTCCAGCAAATGAAGAGACATACTGTGAGAACGAACGTATTAGACATTTTGGAGGTGGGGCGTTTCAACAATGCAATATGGTTGGTAGTCATTTTTTGTATGGAGAAGAGCAATTAGGAGGAGCTGCTAGTAATTGGTTTGCTCCAAATGAACATCGTTCTGTTCCAAGATACCCTAATCAATTCGATTCTTATCCAACGGCCACACAGATCAATAATATATCTCAAATACCGGGAAGTGCAGGAAAATCATCAGAAAATGAGCCAGATAATACAGCTAATCATAATGAGTCACCATCAGTT] consensusID : consensus_1817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [CCTCTACCAGAGATGANNNNGCCAATTAGGCCTTCAATAATAAAACCTCATAAGAAGATTCAAATTCCAGGTATTTCACCCAATAAAATTCCAGCAAATGAAGAGACATACTGTGAGAACGAACGTATTAGACATTTTGGAGGTGGGGCGTTNTCAACATGCATATGGGTGGTAGTCATTTTTTGTATGGAGAAAGAGCATTAGGAGGAGCTGCTAGTANTTGGTTTGCTCCAATGAACATCGTTCTGTTCCAAGATCCCCTATCATTCGATTTTTATCACCGCCACCCAAATAAA] [+] EMBL CD201698 [CCTCTACCAGAGATGANNNNGCCAATTAGGCCTTCAATAATAAAACCTCATAAGAAGATTCAAATTCCAGGTATTTCACCCAATAAAATTCCAGCAAATGAAGAGACATACTGTGAGAACGAACGTATTAGACATTTTGGAGGTGGGGCGTTNTCAACATGCATATGGGTGGTAGTCATTTTTTGTATGGAGAAAGAGCATTAGGAGGAGCTGCTAGTANTTGGTTTGCTCCAATGAACATCGTTCTGTTCCAAGATCCCCTATCATTCGATTTTTATCACCGCCACCCAAATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1817#0 CGACTCACATGGGTAAGACAGCGAATTCCTCTACCAGAAATGAAAAAGCCAATTAGGCCT 60 consensus_1817#1 ---------------------------CCTCTACCAGAGATGANNNNGCCAATTAGGCCT 33 *********** **** ************* consensus_1817#0 TCAATAATAAAACCTCATAAGAAGATTCAAATTCCAGGTATTTCACCCAATAAAATTCCA 120 consensus_1817#1 TCAATAATAAAACCTCATAAGAAGATTCAAATTCCAGGTATTTCACCCAATAAAATTCCA 93 ************************************************************ consensus_1817#0 GCAAATGAAGAGACATACTGTGAGAACGAACGTATTAGACATTTTGGAGGTGGGGCGTTT 180 consensus_1817#1 GCAAATGAAGAGACATACTGTGAGAACGAACGTATTAGACATTTTGGAGGTGGGGCGTTN 153 *********************************************************** consensus_1817#0 CAACAATGCAATATGGTTGGTAGTCATTTTTTGTATGGAGAAGAGCAATTAGGAGGAGCT 240 consensus_1817#1 TCAACATGCA-TATGGGTGGTAGTCATTTTTTGTATGGAGAAAGAGCATTAGGAGGAGCT 212 * ***** ***** ************************* ************* consensus_1817#0 GCTAGTAATTGGTTTGCTCCAAATGAACATCGTTCTGTTCCAAGATACCCTAATCAATTC 300 consensus_1817#1 GCTAGTANTTGGTTTGCTCCAA-TGAACATCGTTCTGTTCCAAGATCCCCTA--TCATTC 269 ******* ************** *********************** ***** **** consensus_1817#0 GATTCTTATCCAACGGCCACACAGATCAATAATATATCTCAAATACCGGGAAGTGCAGGA 360 consensus_1817#1 GATTTTTATC--ACCGCCACCCAAATAAA------------------------------- 296 **** ***** ** ***** ** ** ** consensus_1817#0 AAATCATCAGAAAATGAGCCAGATAATACAGCTAATCATAATGAGTCACCATCAGTT 417 consensus_1817#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||