cluster # 1820

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1820 cluster # 1820 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1820#0 length = 547 sequences # 1

consensus_1820#1 length = 348 sequences # 1

consensusID : consensus_1820#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [CTTTTCATTGGATCTCTTGTAAGCAGAGCTTTTCTCATAGAAACGGATTCTTTGGATAAACTTGGAGGATAAGAAATAGTATGTTGTAATATATTTGCAAATAAATCCTCTTCATCTTCACCTTCAAAAGGAGGCTGACCATCTAACATTTCATATATCAAAACACCATAAGACCACCAATCTACTGATTTACCATAAGGTTTATACAGAAGTATTTCTGGTGCAATATAATCTGGTGTACCACAAAATGTATGTGTTGTAACGTCACCTGTAATACCATCTTTACACATTCCAAAATCAGCTATTTTAATATGTCCATCAGCATCGAGCAGTAAATTATCCAATTTTAAATCCCGATAAATAATTCCTTTATCATGTAAAAAAAATAAACCCACGGCTACTTTAGCAAGCGTAAATACCAGCAATGAGTTCTTTAAATTTTCCTTCCTTTTGTATTCTAAACATTAGATCACCACCATTGGCCAAATCCATTACAAAATATAATCGATCCATAGTTTGAAATGTAGAGTGTAATTGAACAAGAAAT]

[+] EMBL CD062663             [CTTTTCATTGGATCTCTTGTAAGCAGAGCTTTTCTCATAGAAACGGATTCTTTGGATAAACTTGGAGGATAAGAAATAGTATGTTGTAATATATTTGCAAATAAATCCTCTTCATCTTCACCTTCAAAAGGAGGCTGACCATCTAACATTTCATATATCAAAACACCATAAGACCACCAATCTACTGATTTACCATAAGGTTTATACAGAAGTATTTCTGGTGCAATATAATCTGGTGTACCACAAAATGTATGTGTTGTAACGTCACCTGTAATACCATCTTTACACATTCCAAAATCAGCTATTTTAATATGTCCATCAGCATCGAGCAGTAAATTATCCAATTTTAAATCCCGATAAATAATTCCTTTATCATGTAAAAAAAATAAACCCACGGCTACTTTAGCAAGCGTAAATACCAGCAATGAGTTCTTTAAATTTTCCTTCCTTTTGTATTCTAAACATTAGATCACCACCATTGGCCAAATCCATTACAAAATATAATCGATCCATAGTTTGAAATGTAGAGTGTAATTGAACAAGAAAT]




>consensus_1820#0
CTTTTCATTGGATCTCTTGTAAGCAGAGCTTTTCTCATAGAAACGGATTCTTTGGATAAA
CTTGGAGGATAAGAAATAGTATGTTGTAATATATTTGCAAATAAATCCTCTTCATCTTCA
CCTTCAAAAGGAGGCTGACCATCTAACATTTCATATATCAAAACACCATAAGACCACCAA
TCTACTGATTTACCATAAGGTTTATACAGAAGTATTTCTGGTGCAATATAATCTGGTGTA
CCACAAAATGTATGTGTTGTAACGTCACCTGTAATACCATCTTTACACATTCCAAAATCA
GCTATTTTAATATGTCCATCAGCATCGAGCAGTAAATTATCCAATTTTAAATCCCGATAA
ATAATTCCTTTATCATGTAAAAAAAATAAACCCACGGCTACTTTAGCAAGCGTAAATACC
AGCAATGAGTTCTTTAAATTTTCCTTCCTTTTGTATTCTAAACATTAGATCACCACCATT
GGCCAAATCCATTACAAAATATAATCGATCCATAGTTTGAAATGTAGAGTGTAATTGAAC
AAGAAAT

consensusID : consensus_1820#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [TTCTCTCCATAAATTTTCCACTGTGGTAAATCCCGGTTACATTGTTAATTCCCCCCCGAATTACTTTTTCACCTGTGTAAAATAACTCGTTTTATGGAGGGTTTACTAAAGCCAAGCAATTTTTCCCCAATCTTGCGTCGGAAGAACCAATGTTCTTTAATCTCCTTTTCACCATCTGAACCACATCCAAGTCTTTTCATTGGAATCTCTTAGTAAGGCAGAGCTTTACAAATGAGAAACGGATTCTTGGATAAACTTTTAGGATAAGAAATAGTATGTTGTAATATATTTGCAAATAAATCCTCTTCATCTTCACCTTCAAACTGGAGGCTGACCTTCACTGGCCGA]

[-] EMBL AI413079             [TTCTCTCCATAAATTTTCCACTGTGGTAAATCCCGGTTACATTGTTAATTCCCCCCCGAATTACTTTTTCACCTGTGTAAAATAACTCGTTTTATGGAGGGTTTACTAAAGCCAAGCAATTTTTCCCCAATCTTGCGTCGGAAGAACCAATGTTCTTTAATCTCCTTTTCACCATCTGAACCACATCCAAGTCTTTTCATTGGAATCTCTTAGTAAGGCAGAGCTTTACAAATGAGAAACGGATTCTTGGATAAACTTTTAGGATAAGAAATAGTATGTTGTAATATATTTGCAAATAAATCCTCTTCATCTTCACCTTCAAACTGGAGGCTGACCTTCACTGGCCGA]




>consensus_1820#1
TTCTCTCCATAAATTTTCCACTGTGGTAAATCCCGGTTACATTGTTAATTCCCCCCCGAA
TTACTTTTTCACCTGTGTAAAATAACTCGTTTTATGGAGGGTTTACTAAAGCCAAGCAAT
TTTTCCCCAATCTTGCGTCGGAAGAACCAATGTTCTTTAATCTCCTTTTCACCATCTGAA
CCACATCCAAGTCTTTTCATTGGAATCTCTTAGTAAGGCAGAGCTTTACAAATGAGAAAC
GGATTCTTGGATAAACTTTTAGGATAAGAAATAGTATGTTGTAATATATTTGCAAATAAA
TCCTCTTCATCTTCACCTTCAAACTGGAGGCTGACCTTCACTGGCCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1820#0      CTTTTCATTGGATCTCTTGTAAGCAGAGCTTTTCTCATAGAAACGGATTCTTTGGATAAA 60
consensus_1820#1      ------------------------------------------------------------
                                                                                  

consensus_1820#0      CTTGGAGGATAAGAAATAGTATGTTGTAATATATTTGCAAATAAATCCTCTTCATCTTCA 120
consensus_1820#1      ------------------------------------------------TTCTCTCCATAA 12
                                                                      *  **  * * *

consensus_1820#0      CCTTCAAAAGGAGGCTGACCATCTAACATTTCATATATCAAAACACCATAAGACCACCAA 180
consensus_1820#1      ATTTTCCACTGTGGTAAATCCCG----GTTACAT-TGTTAATTCCCCCCCGAATTACTTT 67
                        **   *  * **   * *        ** *** * * **  * **     *  **   

consensus_1820#0      TCTACTGATTTACCATAAGGT-TTATACAGAAGTATTTCTGGTGCAATATAATCTGGTGT 239
consensus_1820#1      TTCACCTGTGTAAAATAACTCGTTTTATGGAGGGTTTACTAAAGCCAAGCAATTTT---T 124
                      *  **   * **  ****    ** **  ** *  ** **   ** *   *** *    *

consensus_1820#0      ACCACAAAATGTATGTGTTGTAACGTCACCTGTAATACCATCTTTACACATTCCAAAATC 299
consensus_1820#1      CCCCAATCTTGCGTCGGAAGAACCAATGTTCTTTA-ATCTCCTTTTCACCATCTGAA-CC 182
                       **  *   **  *  *  * * *        * * * *  **** ***  **  **  *

consensus_1820#0      AGCTATTTTAATATGTCCATCAGCATCGAGCAGTAAATTATCCAATTTTAAATCCCGATA 359
consensus_1820#1      A--CATCCAAGTCTTTTCATTGGAATCTCTTAGTAAGGCAGAGCTTTACAAAT---GAGA 237
                      *   **   * * * * ***  * ***    *****   *     **  ****   ** *

consensus_1820#0      AATAATTCCTTTATCATGTAAAAAAAATAAACCCACGGCTACTTTAGCAAGCGTAAATAC 419
consensus_1820#1      AACGGATTCTTGGATAAACTTTTAGGATAAGAAATAGTATGTTGTAATA--------TAT 289
                      **    * ***    *       *  ****      *  *  * **  *        ** 

consensus_1820#0      CAGCAATGAGTTCTTTAAATTTTCCTTCCTTTTGTATTCTAAACATTAGATCACCACCAT 479
consensus_1820#1      TTGCAAA--------TAAATCCTCTTCATCTTCACCTTCAAACTGGAGGCTGACCTTCAC 341
                        ****         *****  ** *    **    *** **      * * ***  ** 

consensus_1820#0      TGGCCAAATCCATTACAAAATATAATCGATCCATAGTTTGAAATGTAGAGTGTAATTGAA 539
consensus_1820#1      TGGCCGA----------------------------------------------------- 348
                      ***** *                                                     

consensus_1820#0      CAAGAAAT 547
consensus_1820#1      --------