Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1824 cluster # 1824       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1824#0 length = 545 sequences # 1  
consensus_1824#1 length = 220 sequences # 1  

consensusID : consensus_1824#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence
                              [ATTACATTAGAAGAACGAGAGTTATCATAAGAACATGGCATTTTCTTAACAGCTCCACCGCCTCAATTAATCATTGATGAACAATCTCAATCACAAATATCAGAAACAACATTAACCAATATTAATCAAACTGATGTACATGAATCCGTTGACACACATAGTGTCATCGATATAACATTAAGTTCAGACATAGAAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATCCAAGATCAACAAATGACATTGTCCAGCTAATCAATAACAATATAGATTCTAAGTCATCTTTTGTTAAAAGAAAAGGTCGAAATAGATCCTACTTACAGGATGGTACATTAAAAGAGACAAATAAAATTCGTCAAGAATACGGTTTAAAACCGATAAATAAGAATAAAATTTCTTCACCTGCTAAACGACTGCAATCGATTGATCAGAAGAATGAAAAAATTGTACGATATTCAATCATACGGGTACTAAAAACATTGAATTA]

[+] EMBL CD079137             [ATTACATTAGAAGAACGAGAGTTATCATAAGAACATGGCATTTTCTTAACAGCTCCACCGCCTCAATTAATCATTGATGAACAATCTCAATCACAAATATCAGAAACAACATTAACCAATATTAATCAAACTGATGTACATGAATCCGTTGACACACATAGTGTCATCGATATAACATTAAGTTCAGACATAGAAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATCCAAGATCAACAAATGACATTGTCCAGCTAATCAATAACAATATAGATTCTAAGTCATCTTTTGTTAAAAGAAAAGGTCGAAATAGATCCTACTTACAGGATGGTACATTAAAAGAGACAAATAAAATTCGTCAAGAATACGGTTTAAAACCGATAAATAAGAATAAAATTTCTTCACCTGCTAAACGACTGCAATCGATTGATCAGAAGAATGAAAAAATTGTACGATATTCAATCATACGGGTACTAAAAACATTGAATTA]


>consensus_1824#0 ATTACATTAGAAGAACGAGAGTTATCATAAGAACATGGCATTTTCTTAACAGCTCCACCG CCTCAATTAATCATTGATGAACAATCTCAATCACAAATATCAGAAACAACATTAACCAAT ATTAATCAAACTGATGTACATGAATCCGTTGACACACATAGTGTCATCGATATAACATTA AGTTCAGACATAGAAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAA GAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATCCAAGATCAACAAATGAC ATTGTCCAGCTAATCAATAACAATATAGATTCTAAGTCATCTTTTGTTAAAAGAAAAGGT CGAAATAGATCCTACTTACAGGATGGTACATTAAAAGAGACAAATAAAATTCGTCAAGAA TACGGTTTAAAACCGATAAATAAGAATAAAATTTCTTCACCTGCTAAACGACTGCAATCG ATTGATCAGAAGAATGAAAAAATTGTACGATATTCAATCATACGGGTACTAAAAACATTG AATTA



consensusID : consensus_1824#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence
                              [AAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATTTAAGATCAACAAATGACATTGTCCAGCTAATCATACATATGATTCTAGTCACTTTGTTAAAGAAAGGTCGAATAGATCCTACTTACAGGATGTTACATTAAAGAGACAATAAATTCGTCAGATCGGCTTA]

[+] EMBL SMAA69178            [AAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATTTAAGATCAACAAATGACATTGTCCAGCTAATCATACATATGATTCTAGTCACTTTGTTAAAGAAAGGTCGAATAGATCCTACTTACAGGATGTTACATTAAAGAGACAATAAATTCGTCAGATCGGCTTA]


>consensus_1824#1 AAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAA ATAATGTAGATAATGATATTATAAAAGATTTAAGATCAACAAATGACATTGTCCAGCTAA TCATACATATGATTCTAGTCACTTTGTTAAAGAAAGGTCGAATAGATCCTACTTACAGGA TGTTACATTAAAGAGACAATAAATTCGTCAGATCGGCTTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1824#0      ATTACATTAGAAGAACGAGAGTTATCATAAGAACATGGCATTTTCTTAACAGCTCCACCG 60
consensus_1824#1      ------------------------------------------------------------
                                                                                  

consensus_1824#0      CCTCAATTAATCATTGATGAACAATCTCAATCACAAATATCAGAAACAACATTAACCAAT 120
consensus_1824#1      ------------------------------------------------------------
                                                                                  

consensus_1824#0      ATTAATCAAACTGATGTACATGAATCCGTTGACACACATAGTGTCATCGATATAACATTA 180
consensus_1824#1      ------------------------------------------------------------
                                                                                  

consensus_1824#0      AGTTCAGACATAGAAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAA 240
consensus_1824#1      -------------AAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAA 47
                                   ***********************************************

consensus_1824#0      GAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATCCAAGATCAACAAATGAC 300
consensus_1824#1      GAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATTTAAGATCAACAAATGAC 107
                      ******************************************  ****************

consensus_1824#0      ATTGTCCAGCTAATCAATAACAATATAGATTCTAAGTCATCTTTTGTTAAAAGAAAAGGT 360
consensus_1824#1      ATTGTCCAGCTAATCA--TACA-TAT-GATTCTA-GTCAC--TTTGTTAAAG--AAAGGT 158
                      ****************   *** *** ******* ****   *********   ******

consensus_1824#0      CGAAATAGATCCTACTTACAGGATGGTACATTAAAAGAGACAAATAAAATTCGTCAAGAA 420
consensus_1824#1      CGAA-TAGATCCTACTTACAGGATGTTACATTAAA-GAGACAA--TAAATTCGTCAGAT- 213
                      **** ******************** ********* *******   **********    

consensus_1824#0      TACGGTTTAAAACCGATAAATAAGAATAAAATTTCTTCACCTGCTAAACGACTGCAATCG 480
consensus_1824#1      --CGGCTTA--------------------------------------------------- 220
                        *** ***                                                   

consensus_1824#0      ATTGATCAGAAGAATGAAAAAATTGTACGATATTCAATCATACGGGTACTAAAAACATTG 540
consensus_1824#1      ------------------------------------------------------------
                                                                                  

consensus_1824#0      AATTA 545
consensus_1824#1      -----
                           




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)