These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [ATTACATTAGAAGAACGAGAGTTATCATAAGAACATGGCATTTTCTTAACAGCTCCACCGCCTCAATTAATCATTGATGAACAATCTCAATCACAAATATCAGAAACAACATTAACCAATATTAATCAAACTGATGTACATGAATCCGTTGACACACATAGTGTCATCGATATAACATTAAGTTCAGACATAGAAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATCCAAGATCAACAAATGACATTGTCCAGCTAATCAATAACAATATAGATTCTAAGTCATCTTTTGTTAAAAGAAAAGGTCGAAATAGATCCTACTTACAGGATGGTACATTAAAAGAGACAAATAAAATTCGTCAAGAATACGGTTTAAAACCGATAAATAAGAATAAAATTTCTTCACCTGCTAAACGACTGCAATCGATTGATCAGAAGAATGAAAAAATTGTACGATATTCAATCATACGGGTACTAAAAACATTGAATTA] [+] EMBL CD079137 [ATTACATTAGAAGAACGAGAGTTATCATAAGAACATGGCATTTTCTTAACAGCTCCACCGCCTCAATTAATCATTGATGAACAATCTCAATCACAAATATCAGAAACAACATTAACCAATATTAATCAAACTGATGTACATGAATCCGTTGACACACATAGTGTCATCGATATAACATTAAGTTCAGACATAGAAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATCCAAGATCAACAAATGACATTGTCCAGCTAATCAATAACAATATAGATTCTAAGTCATCTTTTGTTAAAAGAAAAGGTCGAAATAGATCCTACTTACAGGATGGTACATTAAAAGAGACAAATAAAATTCGTCAAGAATACGGTTTAAAACCGATAAATAAGAATAAAATTTCTTCACCTGCTAAACGACTGCAATCGATTGATCAGAAGAATGAAAAAATTGTACGATATTCAATCATACGGGTACTAAAAACATTGAATTA] consensusID : consensus_1824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [AAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATTTAAGATCAACAAATGACATTGTCCAGCTAATCATACATATGATTCTAGTCACTTTGTTAAAGAAAGGTCGAATAGATCCTACTTACAGGATGTTACATTAAAGAGACAATAAATTCGTCAGATCGGCTTA] [+] EMBL SMAA69178 [AAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAAGAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATTTAAGATCAACAAATGACATTGTCCAGCTAATCATACATATGATTCTAGTCACTTTGTTAAAGAAAGGTCGAATAGATCCTACTTACAGGATGTTACATTAAAGAGACAATAAATTCGTCAGATCGGCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1824#0 ATTACATTAGAAGAACGAGAGTTATCATAAGAACATGGCATTTTCTTAACAGCTCCACCG 60 consensus_1824#1 ------------------------------------------------------------ consensus_1824#0 CCTCAATTAATCATTGATGAACAATCTCAATCACAAATATCAGAAACAACATTAACCAAT 120 consensus_1824#1 ------------------------------------------------------------ consensus_1824#0 ATTAATCAAACTGATGTACATGAATCCGTTGACACACATAGTGTCATCGATATAACATTA 180 consensus_1824#1 ------------------------------------------------------------ consensus_1824#0 AGTTCAGACATAGAAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAA 240 consensus_1824#1 -------------AAATGAAAAAAGATAGATATCAGTCGGATTTACCAGTTACGAAAAAA 47 *********************************************** consensus_1824#0 GAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATCCAAGATCAACAAATGAC 300 consensus_1824#1 GAATCTCAAATAAATAATGTAGATAATGATATTATAAAAGATTTAAGATCAACAAATGAC 107 ****************************************** **************** consensus_1824#0 ATTGTCCAGCTAATCAATAACAATATAGATTCTAAGTCATCTTTTGTTAAAAGAAAAGGT 360 consensus_1824#1 ATTGTCCAGCTAATCA--TACA-TAT-GATTCTA-GTCAC--TTTGTTAAAG--AAAGGT 158 **************** *** *** ******* **** ********* ****** consensus_1824#0 CGAAATAGATCCTACTTACAGGATGGTACATTAAAAGAGACAAATAAAATTCGTCAAGAA 420 consensus_1824#1 CGAA-TAGATCCTACTTACAGGATGTTACATTAAA-GAGACAA--TAAATTCGTCAGAT- 213 **** ******************** ********* ******* ********** consensus_1824#0 TACGGTTTAAAACCGATAAATAAGAATAAAATTTCTTCACCTGCTAAACGACTGCAATCG 480 consensus_1824#1 --CGGCTTA--------------------------------------------------- 220 *** *** consensus_1824#0 ATTGATCAGAAGAATGAAAAAATTGTACGATATTCAATCATACGGGTACTAAAAACATTG 540 consensus_1824#1 ------------------------------------------------------------ consensus_1824#0 AATTA 545 consensus_1824#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||