These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1832#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [GGTTATGTATCTCGATCACATAGTAAACGTTTATTACATAAATATAATTGGGATTTAGATGCAGCTATCTCACGAGCTCATTATGTGTATGAATTTCGAAAGTTAAAACGTCAAGAAAAAAATGAACGAATACTATTTGATGATGAAGATCAATTATCATATTTTAATCGGACTAAAGATTGTAGTAAATATTTAACACCTTATTCATCAACTTCATCAGATTCTTCTTTATCACCTTTACCATGTTCTGTTAATCATCAATCAGTTATTTCACCATGGTATGATGAAGGTCGAAAAAGTAATCTATTTTAATTGAATATTTTAACTCTGTGAGATATAATTTCTGTAGAAAAATGGTATATGTATGTGATACATACTATTGGCTTCTCGATCCTCCTCGATCTAAAACATTACGCGATAATTCTACACTTATGCGTAGAGCAACTGAATGTGTTTGTGTTCCTCCATCTTCACCACTGGACATTTATTCTACAATTGACAGTTATACTACTAATCTTCCCTAGCGAACTATCGGATTCATCACCAGAATCAATATTTGACAATTATTCTATATTANAGGGTTTATATANAGAAAC] [+] EMBL CD079150 [GGTTATGTATCTCGATCACATAGTAAACGTTTATTACATAAATATAATTGGGATTTAGATGCAGCTATCTCACGAGCTCATTATGTGTATGAATTTCGAAAGTTAAAACGTCAAGAAAAAAATGAACGAATACTATTTGATGATGAAGATCAATTATCATATTTTAATCGGACTAAAGATTGTAGTAAATATTTAACACCTTATTCATCAACTTCATCAGATTCTTCTTTATCACCTTTACCATGTTCTGTTAATCATCAATCAGTTATTTCACCATGGTATGATGAAGGTCGAAAAAGTAATCTATTTTAATTGAATATTTTAACTCTGTGAGATATAATTTCTGTAGAAAAATGGTATATGTATGTGATACATACTATTGGCTTCTCGATCCTCCTCGATCTAAAACATTACGCGATAATTCTACACTTATGCGTAGAGCAACTGAATGTGTTTGTGTTCCTCCATCTTCACCACTGGACATTTATTCTACAATTGACAGTTATACTACTAATCTTCCCTAGCGAACTATCGGATTCATCACCAGAATCAATATTTGACAATTATTCTATATTANAGGGTTTATATANAGAAAC] consensusID : consensus_1832#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [AAGATAATCTTGTATTCGAGAACTGCTTGGATTGCATCGATGATCAAACGACAAATACAACCACTCTTTCCAGTGATTATACATCTTCTATAGATGACTGTTCCTCTATTTTTTATGATCCTATATTGGCTAAACTTGAAGCAGAATTGCCTGTTCCACCCCCTCCTCCACGTGCTTGCCCACCTTGGCTTAAAGCTGCTCTTGCAAAACAAGAAGCTTTAAGCAAAGAACCAGTGAAAAAAATTGATTTTAAAGATAGATGCTGTGTATCATCCTCGTTGCAATTACCCACATCTCAGTTGTCCCCTCTTCCATCTGACTTGGATCAACATAAAGCTTTAAGCCTTGGAAATAGCCGTTATAATGTTCGCATTTATCCAATTATACAAAATGGAGTAAAAATAAGTGATACACACTATTGGCTTCTCGATCCCCCTCGATCTAAAACGTTACGCGATAATTCTACACTTATGCGTAGAGCAACTGAATGTGTTCATGTTCC] [+] EMBL CD183547 [AAGATAATCTTGTATTCGAGAACTGCTTGGATTGCATCGATGATCAAACGACAAATACAACCACTCTTTCCAGTGATTATACATCTTCTATAGATGACTGTTCCTCTATTTTTTATGATCCTATATTGGCTAAACTTGAAGCAGAATTGCCTGTTCCACCCCCTCCTCCACGTGCTTGCCCACCTTGGCTTAAAGCTGCTCTTGCAAAACAAGAAGCTTTAAGCAAAGAACCAGTGAAAAAAATTGATTTTAAAGATAGATGCTGTGTATCATCCTCGTTGCAATTACCCACATCTCAGTTGTCCCCTCTTCCATCTGACTTGGATCAACATAAAGCTTTAAGCCTTGGAAATAGCCGTTATAATGTTCGCATTTATCCAATTATACAAAATGGAGTAAAAATAAGTGATACACACTATTGGCTTCTCGATCCCCCTCGATCTAAAACGTTACGCGATAATTCTACACTTATGCGTAGAGCAACTGAATGTGTTCATGTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1832#0 ----------------------------GGTTATGTATCT-CGATCACATAGTAAA---- 27 consensus_1832#1 AAGATAATCTTGTATTCGAGAACTGCTTGGAT-TGCATCGATGATCAAACGACAAATACA 59 ** * ** *** ***** * *** consensus_1832#0 --CGTTTATTACA-TAAATATAATTGGGATTTAGATGCAGCTATCTCACGAGCTCATTAT 84 consensus_1832#1 ACCACTCTTTCCAGTGATTATACATCTTCTATAGATG--ACTGTTCCTCTA-TTTTTTAT 116 * * ** ** * * **** * * ****** ** * * * * * **** consensus_1832#0 GTGTATGAATTT-CGAAAGTTAAAACGTCAAGAAAAAAATGAACGAATACT--ATTTGAT 141 consensus_1832#1 GATCCTATATTGGCTAAACTTGAAGCAGAATTGCCTGTTCCACCCCCTCCTCCACGTGCT 176 * * *** * *** ** ** * * * * * ** * ** * consensus_1832#0 GATGAAGATCAATTATCA--TATTTTAATCGGACTAAAGATTGTA-GTAAATATTTAACA 198 consensus_1832#1 TGCCCACCTTGGCTTAAAGCTGCTCTTGCAAAACAAGAAGCTTTAAGCAAAGAACCAGTG 236 * * * * * * * ** * * * ** * *** * * consensus_1832#0 CCTTATTCATCAACTTCATCAGATTCTTCTTTATCACCTTTACCATGTTCTGTTAATCAT 258 consensus_1832#1 AAAAAA--ATTGATTTTAA-AGATAGATGCTGTGTATCATCCTCGT-TGCAATTACCCAC 292 * ** * ** * **** * * * * * * * * * *** ** consensus_1832#0 CAATCAGTTATTTCACCATG-GTATGATGAAGGTCGAAAAAGTAATCTA----TTTTAAT 313 consensus_1832#1 ATCTCAGTTGTCCCCTCTTCCATCTGACTTGGATCAACATAAAGCTTTAAGCCTTGGAAA 352 ****** * * * * * *** * ** * * * * ** ** ** consensus_1832#0 TGAATATTTTAACTCTGTGAGATATA-ATTTCTGTAGAAAAATGGTATATGTATGTGATA 372 consensus_1832#1 TAGCCGTTATAATGTTCGCATTTATCCAATTATACA-AAATGGAGTAAAAATAAGTGATA 411 * ** *** * * *** * ** * * *** *** * ** ****** consensus_1832#0 CATACTATTGGCTTCTCGATCCTCCTCGATCTAAAACATTACGCGATAATTCTACACTTA 432 consensus_1832#1 CACACTATTGGCTTCTCGATCCCCCTCGATCTAAAACGTTACGCGATAATTCTACACTTA 471 ** ******************* ************** ********************** consensus_1832#0 TGCGTAGAGCAACTGAATGTGTTTGTGTTCCTCCATCTTCACCACTGGACATTTATTCTA 492 consensus_1832#1 TGCGTAGAGCAACTGAATGTGTTCATGTTCC----------------------------- 502 *********************** ****** consensus_1832#0 CAATTGACAGTTATACTACTAATCTTCCCTAGCGAACTATCGGATTCATCACCAGAATCA 552 consensus_1832#1 ------------------------------------------------------------ consensus_1832#0 ATATTTGACAATTATTCTATATTANAGGGTTTATATANAGAAAC 596 consensus_1832#1 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||