These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1843#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [ATTACTTTAGTTCAAGTCTTATATTATTGACTAGTTTGTTAATTCTACTCGGCACTGTTAGTTCAAGTGTGAAATGGATCATTTTAAAAATTATTGTCAAAATACTTTTGTTAGATCGCTTCCTATTGCGTAGACTACATCAAACTGGTAATAAATGGATGCATTCACTGGATATATCTGACTGGCTGTACAAACCTGAACATGTCGCAGCGTTATGGACTTGATTACTGATTTGGTGGATTATATTTCTAGTATTTCGTTTCAAAGCAATTATTCATCTACATCCTAATGGTTCATTATGGGAAAAATGCCAATATTATGCCCCAGTGATCACTGGCGCTTTCATAGTTTACAACCAATTATTATATAAGATAGCATTGATCAGATTACGAACATGAAGATGCTATACAATCAGCTCGAATTGTTTACTTTTTGTGCATAGTAGATGCATTTTGTTTGTATAAATCAAGAAGTATACGTTTAAATAAAATTGCTAATCGTTTATTTGGTCAAACATCAGCGAATTCATCAAAAACATTNTGGGATTCAATTATTCATCCATTATCTACATTANATATACTCATGTGTTTACTTGGTAAACCTGTGATTACAATTTTATGGCTTAGTATATGGATTA] [+] EMBL CD079210 [ATTACTTTAGTTCAAGTCTTATATTATTGACTAGTTTGTTAATTCTACTCGGCACTGTTAGTTCAAGTGTGAAATGGATCATTTTAAAAATTATTGTCAAAATACTTTTGTTAGATCGCTTCCTATTGCGTAGACTACATCAAACTGGTAATAAATGGATGCATTCACTGGATATATCTGACTGGCTGTACAAACCTGAACATGTCGCAGCGTTATGGACTTGATTACTGATTTGGTGGATTATATTTCTAGTATTTCGTTTCAAAGCAATTATTCATCTACATCCTAATGGTTCATTATGGGAAAAATGCCAATATTATGCCCCAGTGATCACTGGCGCTTTCATAGTTTACAACCAATTATTATATAAGATAGCATTGATCAGATTACGAACATGAAGATGCTATACAATCAGCTCGAATTGTTTACTTTTTGTGCATAGTAGATGCATTTTGTTTGTATAAATCAAGAAGTATACGTTTAAATAAAATTGCTAATCGTTTATTTGGTCAAACATCAGCGAATTCATCAAAAACATTNTGGGATTCAATTATTCATCCATTATCTACATTANATATACTCATGTGTTTACTTGGTAAACCTGTGATTACAATTTTATGGCTTAGTATATGGATTA] consensusID : consensus_1843#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [GGCAGATCGGCACGAGACGTCCTAATGGTTCATTATGGGAAAATGTCAATATTATGCCCCAGTGATCACTGGCGCTTTCATAGTTTACAACCAATTATTATATAGGATAGCAGTATCAGATTACGAACATGAAGATGCTATACAATCAGCTCGAATTGTTTACTTTTTGTGCATAGTAGATGCATTTTGTTTGTATAAATCAAGAAGTATACGTTTAAATAAAATTGCTAATCGTTTATTTGGTCAAACATCAGCGAATTCATCAAACATTTTGGGATTCAATTATTCATCCATTATCTACATTAAATATACTCATGTGTTTACTTGGTAAACCTGTGATTACAATTTTATGGCTTAGTATATGGATTAAAGAAGCGTTAATATCCGAAATGATACAATTAATATTTCATTATTCGGGTATTCATTCATCGCATAATACATT] [+] EMBL CD084093 [GGCAGATCGGCACGAGACGTCCTAATGGTTCATTATGGGAAAATGTCAATATTATGCCCCAGTGATCACTGGCGCTTTCATAGTTTACAACCAATTATTATATAGGATAGCAGTATCAGATTACGAACATGAAGATGCTATACAATCAGCTCGAATTGTTTACTTTTTGTGCATAGTAGATGCATTTTGTTTGTATAAATCAAGAAGTATACGTTTAAATAAAATTGCTAATCGTTTATTTGGTCAAACATCAGCGAATTCATCAAACATTTTGGGATTCAATTATTCATCCATTATCTACATTAAATATACTCATGTGTTTACTTGGTAAACCTGTGATTACAATTTTATGGCTTAGTATATGGATTAAAGAAGCGTTAATATCCGAAATGATACAATTAATATTTCATTATTCGGGTATTCATTCATCGCATAATACATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1843#0 ATTACTTTAGTTCAAGTCTTATATTATTGACTAGTTTGTTAATTCTACTCGGCACTGTTA 60 consensus_1843#1 ------------------------------------------------------------ consensus_1843#0 GTTCAAGTGTGAAATGGATCATTTTAAAAATTATTGTCAAAATACTTTTGTTAGATCGCT 120 consensus_1843#1 ------------------------------------------------------------ consensus_1843#0 TCCTATTGCGTAGACTACATCAAACTGGTAATAAATGGATGCATTCACTGGATATATCTG 180 consensus_1843#1 ------------------------------------------------------------ consensus_1843#0 ACTGGCTGTACAAACCTGAACATGTCGCAGCGTTATGGACTTGATTACTGATTTGGTGGA 240 consensus_1843#1 ------------------------------------------------------------ consensus_1843#0 TTATATTTCTAGTATTTCGTTTCAAAGCAATTATTCATCT-ACATCCTAATGGTTCATTA 299 consensus_1843#1 -------------------------GGCAGATCGGCACGAGACGTCCTAATGGTTCATTA 35 *** * ** ** **************** consensus_1843#0 TGGGAAAAATGCCAATATTATGCCCCAGTGATCACTGGCGCTTTCATAGTTTACAACCAA 359 consensus_1843#1 TGGGAAAA-TGTCAATATTATGCCCCAGTGATCACTGGCGCTTTCATAGTTTACAACCAA 94 ******** ** ************************************************ consensus_1843#0 TTATTATATAAGATAGCATTGATCAGATTACGAACATGAAGATGCTATACAATCAGCTCG 419 consensus_1843#1 TTATTATATAGGATAGCAGT-ATCAGATTACGAACATGAAGATGCTATACAATCAGCTCG 153 ********** ******* * *************************************** consensus_1843#0 AATTGTTTACTTTTTGTGCATAGTAGATGCATTTTGTTTGTATAAATCAAGAAGTATACG 479 consensus_1843#1 AATTGTTTACTTTTTGTGCATAGTAGATGCATTTTGTTTGTATAAATCAAGAAGTATACG 213 ************************************************************ consensus_1843#0 TTTAAATAAAATTGCTAATCGTTTATTTGGTCAAACATCAGCGAATTCATCAAAAACATT 539 consensus_1843#1 TTTAAATAAAATTGCTAATCGTTTATTTGGTCAAACATCAGCGAATTCATCAA--ACATT 271 ***************************************************** ***** consensus_1843#0 NTGGGATTCAATTATTCATCCATTATCTACATTANATATACTCATGTGTTTACTTGGTAA 599 consensus_1843#1 TTGGGATTCAATTATTCATCCATTATCTACATTAAATATACTCATGTGTTTACTTGGTAA 331 ********************************* ************************* consensus_1843#0 ACCTGTGATTACAATTTTATGGCTTAGTATATGGATTA---------------------- 637 consensus_1843#1 ACCTGTGATTACAATTTTATGGCTTAGTATATGGATTAAAGAAGCGTTAATATCCGAAAT 391 ************************************** consensus_1843#0 --------------------------------------------------- consensus_1843#1 GATACAATTAATATTTCATTATTCGGGTATTCATTCATCGCATAATACATT 442 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||