cluster # 1851

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Schistosoma mansoni
cluster # 1851 cluster # 1851 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1851#0 length = 620 sequences # 1

consensus_1851#1 length = 467 sequences # 1

consensusID : consensus_1851#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CTGATATAGAATGATAAGTAGTATAAATCCTTTGTAATTAATTAATTCTGCTTATTTAGATACATAGATTCATTGTTAGTAGTAGTGATTAACATTATTAGTAGTATTTTTAATTGATTCATATTTTATTTTCATAATTGAAAGCATGAATCAATTGATGATAGACCACCAAGGAAAACCTGGGCGGCCATATTGTGGGTCTCATGGGTTCAAATCTCACCCACGAGGCGAGATCATGGATGCTCATTGCTGAGGAGTCCCATAATAGGACGAAACGGCCGTCAAGAGGTGCTTCCAGGGATTTCCTTGGTGGTCTAGCTTCAATTAGATCATGCTTTCAACTATGAAAATACTGAAATCTTCACAAAATCCCTTCTAATATTTTATTATTATTATTTTTCTTTATCTTTCTGTTCTATATTACTGTTACATCTACCTCGAATAGCAGAATCATATTGACTGTGTGTTATTGTTCATTTATGATTGTTTTATTGATATCTATAACTATCTATATACATAGATGGATACAAATGTGTTCATGTATGGATAAGCTCATATTTCTATATTTACATATCTATATATTTCTTTTGGTGGTACCGTTAATACATTGTGACATCTTC]

[+] EMBL CD079263             [CTGATATAGAATGATAAGTAGTATAAATCCTTTGTAATTAATTAATTCTGCTTATTTAGATACATAGATTCATTGTTAGTAGTAGTGATTAACATTATTAGTAGTATTTTTAATTGATTCATATTTTATTTTCATAATTGAAAGCATGAATCAATTGATGATAGACCACCAAGGAAAACCTGGGCGGCCATATTGTGGGTCTCATGGGTTCAAATCTCACCCACGAGGCGAGATCATGGATGCTCATTGCTGAGGAGTCCCATAATAGGACGAAACGGCCGTCAAGAGGTGCTTCCAGGGATTTCCTTGGTGGTCTAGCTTCAATTAGATCATGCTTTCAACTATGAAAATACTGAAATCTTCACAAAATCCCTTCTAATATTTTATTATTATTATTTTTCTTTATCTTTCTGTTCTATATTACTGTTACATCTACCTCGAATAGCAGAATCATATTGACTGTGTGTTATTGTTCATTTATGATTGTTTTATTGATATCTATAACTATCTATATACATAGATGGATACAAATGTGTTCATGTATGGATAAGCTCATATTTCTATATTTACATATCTATATATTTCTTTTGGTGGTACCGTTAATACATTGTGACATCTTC]




>consensus_1851#0
CTGATATAGAATGATAAGTAGTATAAATCCTTTGTAATTAATTAATTCTGCTTATTTAGA
TACATAGATTCATTGTTAGTAGTAGTGATTAACATTATTAGTAGTATTTTTAATTGATTC
ATATTTTATTTTCATAATTGAAAGCATGAATCAATTGATGATAGACCACCAAGGAAAACC
TGGGCGGCCATATTGTGGGTCTCATGGGTTCAAATCTCACCCACGAGGCGAGATCATGGA
TGCTCATTGCTGAGGAGTCCCATAATAGGACGAAACGGCCGTCAAGAGGTGCTTCCAGGG
ATTTCCTTGGTGGTCTAGCTTCAATTAGATCATGCTTTCAACTATGAAAATACTGAAATC
TTCACAAAATCCCTTCTAATATTTTATTATTATTATTTTTCTTTATCTTTCTGTTCTATA
TTACTGTTACATCTACCTCGAATAGCAGAATCATATTGACTGTGTGTTATTGTTCATTTA
TGATTGTTTTATTGATATCTATAACTATCTATATACATAGATGGATACAAATGTGTTCAT
GTATGGATAAGCTCATATTTCTATATTTACATATCTATATATTTCTTTTGGTGGTACCGT
TAATACATTGTGACATCTTC

consensusID : consensus_1851#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [GTCCTATTATGGGACTCCTCAGCAGTGTGCATCCATGATCTCGCACTCGCGAGATTCAAACCCAGGACCTATCAGTCTAGCTTCAATTGATTCACGCTTTCAACTATATAATAATGTTATCTAATTAAGCCAATTTTTATCTCTTCTACATAAATTAACTTATATTTTCATCATGGTATGGACGTGTTAAGTGTACTACACTGAGTCATAATGGATGAAAAACTAAAATATAGCAGAAGTCAAACCTCCAAGTATCCCAAAATGTCTACAACTGAGCGACTAAACAAACGGAAACAACCCTAATTACTGATTACATTACCCCTCGATGACTTGACAACGTGGAGTTTATCCGCAGGTGTTACAATGAATACTGTTATCGATCAGATTACGTTTCGAGGATATAATTGGTCTAAAAGAATTGCTGGCCGGTTGGTTGTTTCGCTCATAAACCTAATAAATGAATTCAA]

[+] EMBL CD093246             [GTCCTATTATGGGACTCCTCAGCAGTGTGCATCCATGATCTCGCACTCGCGAGATTCAAACCCAGGACCTATCAGTCTAGCTTCAATTGATTCACGCTTTCAACTATATAATAATGTTATCTAATTAAGCCAATTTTTATCTCTTCTACATAAATTAACTTATATTTTCATCATGGTATGGACGTGTTAAGTGTACTACACTGAGTCATAATGGATGAAAAACTAAAATATAGCAGAAGTCAAACCTCCAAGTATCCCAAAATGTCTACAACTGAGCGACTAAACAAACGGAAACAACCCTAATTACTGATTACATTACCCCTCGATGACTTGACAACGTGGAGTTTATCCGCAGGTGTTACAATGAATACTGTTATCGATCAGATTACGTTTCGAGGATATAATTGGTCTAAAAGAATTGCTGGCCGGTTGGTTGTTTCGCTCATAAACCTAATAAATGAATTCAA]




>consensus_1851#1
GTCCTATTATGGGACTCCTCAGCAGTGTGCATCCATGATCTCGCACTCGCGAGATTCAAA
CCCAGGACCTATCAGTCTAGCTTCAATTGATTCACGCTTTCAACTATATAATAATGTTAT
CTAATTAAGCCAATTTTTATCTCTTCTACATAAATTAACTTATATTTTCATCATGGTATG
GACGTGTTAAGTGTACTACACTGAGTCATAATGGATGAAAAACTAAAATATAGCAGAAGT
CAAACCTCCAAGTATCCCAAAATGTCTACAACTGAGCGACTAAACAAACGGAAACAACCC
TAATTACTGATTACATTACCCCTCGATGACTTGACAACGTGGAGTTTATCCGCAGGTGTT
ACAATGAATACTGTTATCGATCAGATTACGTTTCGAGGATATAATTGGTCTAAAAGAATT
GCTGGCCGGTTGGTTGTTTCGCTCATAAACCTAATAAATGAATTCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1851#0      CTGATATAGAATGATAAGTAGTATAAATCCTTTGTAATTAATTAATTCTGCTTATTTAGA 60
consensus_1851#1      -----------------------GTCCTATTATGGGACTCCTCAGCAGTGTGCATCCATG 37
                                                 *  * **  * *  * *    **   **  *  

consensus_1851#0      TACATAGATTCATTGTTAGTAGTAGTGATTAACATTATTAGTAGTATTTTTAATTGATTC 120
consensus_1851#1      ATCTCGCACTC---GCGAGATTCAAACCCAGGACCTATCAGTC-TAGCTTCAATTGATTC 93
                        *    * **   *  **    *           *** ***  **  ** *********

consensus_1851#0      ATATTTT-ATTTTCATAATTGAAAGCATGAATCAATTGATGATAGACCACCAAGGAAAAC 179
consensus_1851#1      ACGCTTTCAACTATATAAT----AATGTTATCTAATTAA---------GCCAATTTTTAT 140
                      *   *** *  *  *****    *   * *   **** *          ****     * 

consensus_1851#0      CTGGGCGGCCATATTGTGGGTCTCATGGGTTCAA-ATCTCACCCACGAGGCGAGATCATG 238
consensus_1851#1      CT---CTTCTACATAAATTAACTTATATTTTCATCATGGTATGGACGTGTTAAGTGTACT 197
                      **   *  * * **       ** **   ****  **   *   *** *   **   *  

consensus_1851#0      GATGCTCATTGCTGAGGAGTCCCATAATAGGACGAAACGGCCGTCAAGAGGTGCTTCCAG 298
consensus_1851#1      -ACACTGAGTCATAATGGATGAAAAACTAAAATATAGCAGAAGTCAA-----ACCTCCAA 251
                       *  ** * *  * * *  *   * * **  *   * * *  *****      * **** 

consensus_1851#0      GGATTTCCTTGGTGGTCTAGCTTCAATTAGATCATGCTTTCAACTATGAAAATACTGAAA 358
consensus_1851#1      GTAT--CCCAAAATGTCTA----CAACTGAGCGACTAAACAAACGGAAACAACCCTAATT 305
                      * **  **      *****    *** *     *       ***    * **  ** *  

consensus_1851#0      TCTTCACAAAATCCCTTCTAATATTTTATTATTATTATTTTTCTTTATCTTTCTGTTCTA 418
consensus_1851#1      ACTGATTACATTACCCCTCGATGACTTGACAACGTGGAGTTTATCCGCAGGTGTTACAAT 365
                       **    * * * **     **   **   *   *    *** *       * *      

consensus_1851#0      TATTACTGTTACATCTACCTCGAATAGCAGAATCATATTGACTGTGTGTTATTGTTCATT 478
consensus_1851#1      GAATACTGTTA--------TCGATCAG----ATTACGTTTCGAGGATATAATTGGTCTAA 413
                       * ********        ****  **    ** *  **    *  * * **** **   

consensus_1851#0      TATGATTGTT---TTATTGATATCTATAACTATCTATATACATAGATGGATACAAATGTG 535
consensus_1851#1      AAGAATTGCTGGCCGGTTGGTTGTTTCGCTCATAAACCTA-ATAAATGAATTCAA----- 467
                       *  **** *      *** *   *      **  *  ** *** *** ** ***     

consensus_1851#0      TTCATGTATGGATAAGCTCATATTTCTATATTTACATATCTATATATTTCTTTTGGTGGT 595
consensus_1851#1      ------------------------------------------------------------
                                                                                  

consensus_1851#0      ACCGTTAATACATTGTGACATCTTC 620
consensus_1851#1      -------------------------