These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [AACTTTTTTAATAAAGATGATAGAAGTACAAAAAAGGCTTTAAAAGCATTTTTCTCTGTCAAGGTTTTTCTAAAAAAAATTTCCATTTGCATATACATATCCAGTCTTAAATTGAATTGAGGTTAACTATTGAGCTGCATGTAGATTTTTTATGAAACAATTTATTCCAATACTAAGGTACACTTTATTTAATGTTTTCAATAATAGTCACAAAATGCTAGATCTTTGTGTATAAAAAACAAGCCACAGGATAAAAGCGAAAAGTTCACATATATAGAAACGTTTGCATGAAGAAATATTTATGTCAATAAAACGTTTATACAAAGAATATTCAATATTAGTTATTCGTAAAAAGAAATAATAAAGCATGTTTAACGATTTTAGGAATATGCTGAACAAGCAAACATGTC] [+] EMBL AI977416 [AACTTTTTTAATAAAGATGATAGAAGTACAAAAAAGGCTTTAAAAGCATTTTTCTCTGTCAAGGTTTTTCTAAAAAAAATTTCCATTTGCATATACATATCCAGTCTTAAATTGAATTGAGGTTAACTATTGAGCTGCATGTAGATTTTTTATGAAACAATTTATTCCAATACTAAGGTACACTTTATTTAATGTTTTCAATAATAGTCACAAAATGCTAGATCTTTGTGTATAAAAAACAAGCCACAGGATAAAAGCGAAAAGTTCACATATATAGAAACGTTTGCATGAAGAAATATTTATGTCAATAAAACGTTTATACAAAGAATATTCAATATTAGTTATTCGTAAAAAGAAATAATAAAGCATGTTTAACGATTTTAGGAATATGCTGAACAAGCAAACATGTC] consensusID : consensus_1858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence [TTCTGCATGTAAGGAAATATTCATGTAAATAAAATGTTTATACAAAGAATATTTAATATTAGTTTTTCGTAAAAAGAAAGAATAAAGCATGTTTAAGGATTTTAGGAATATGCGGAACAAGCAAACATGTCAACCAGATCAGAAAGTAAATGGCAATTGGGTTTAACTCTAATTTATTAA] [+] EMBL CD062774 [TTCTGCATGTAAGGAAATATTCATGTAAATAAAATGTTTATACAAAGAATATTTAATATTAGTTTTTCGTAAAAAGAAAGAATAAAGCATGTTTAAGGATTTTAGGAATATGCGGAACAAGCAAACATGTCAACCAGATCAGAAAGTAAATGGCAATTGGGTTTAACTCTAATTTATTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1858#0 AACTTTTTTAATAAAGATGATAGAAGTACAAAAAAGGCTTTAAAAGCATTTTTCTCTGTC 60 consensus_1858#1 ------------------------------------------------------------ consensus_1858#0 AAGGTTTTTCTAAAAAAAATTTCCATTTGCATATACATATCCAGTCTTAAATTGAATTGA 120 consensus_1858#1 ------------------------------------------------------------ consensus_1858#0 GGTTAACTATTGAGCTGCATGTAGATTTTTTATGAAACAATTTATTCCAATACTAAGGTA 180 consensus_1858#1 ------------------------------------------------------------ consensus_1858#0 CACTTTATTTAATGTTTTCAATAATAGTCACAAAATGCTAGATCTTTGTGTATAAAAAAC 240 consensus_1858#1 ------------------------------------------------------------ consensus_1858#0 AAGCCACAGGATAAAAGCGAAAAGTTCACATATATAGAAACGTTTGCATG--AAGAAATA 298 consensus_1858#1 -----------------------------------------TTCTGCATGTAAGGAAATA 19 * ****** * ****** consensus_1858#0 TTTATGTCAATAAAACGTTTATACAAAGAATATTCAATATTAGTTATTCGTAAAAAGAAA 358 consensus_1858#1 TTCATGTAAATAAAATGTTTATACAAAGAATATTTAATATTAGTTTTTCGTAAAAAGAAA 79 ** **** ******* ****************** ********** ************** consensus_1858#0 TAATAAAGCATGTTTAACGATTTTAGGAATATGCTGAACAAGCAAACATGTC-------- 410 consensus_1858#1 GAATAAAGCATGTTTAAGGATTTTAGGAATATGCGGAACAAGCAAACATGTCAACCAGAT 139 **************** **************** ***************** consensus_1858#0 ----------------------------------------- consensus_1858#1 CAGAAAGTAAATGGCAATTGGGTTTAACTCTAATTTATTAA 180 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||