cluster # 1874

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Schistosoma mansoni
cluster # 1874 cluster # 1874 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1874#0 length = 546 sequences # 1

consensus_1874#1 length = 203 sequences # 1

consensusID : consensus_1874#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence

                              [CTGATGAAAAAGATTCTTATCAAGAGAATAGAGAAGCTCGTCGACTTGCTCGTAAAATGCAGAAAAAAGCTGAGAAAAAAGCTTTAAAGAAGGCTGCTAAACGAGAAGCAAAACGATTAGCAAAAGAGAAACGAGCTGAAAGACGTGCTCGACGAGAAGCTAAACGTGAATTAAAACGTCTTCATAAACTGGAAAAATGTCGTTTAACGGAACAAGGAAGTTTAGATTTTGATGTTCAAGAATCGAATACGAGAAATCCTGACGTTAACCTAGAGAGCTCTAGTAATCATGCATGGGATGAAAATCACTGGTCTTCCGCTTCTCATTCTGAGCCTGTTCAAACTAATGAAGATTCTACCGACTCCAGTTCTAACAAACCCATCGTGCCTACCTTGGACGATAAATGTGCCAACTCGCTTCGTAAGTTTTATGCAATCCTTTTGTTTTAAGCTTGTAAATCTGCAGTTGAACCACTTTCCTATACATCCATTTTATGTTTATATATCTGTATAAGTGAAGCTTAATGGTTGGCTTGTTTGAAAGTTT]

[+] EMBL CD194566             [CTGATGAAAAAGATTCTTATCAAGAGAATAGAGAAGCTCGTCGACTTGCTCGTAAAATGCAGAAAAAAGCTGAGAAAAAAGCTTTAAAGAAGGCTGCTAAACGAGAAGCAAAACGATTAGCAAAAGAGAAACGAGCTGAAAGACGTGCTCGACGAGAAGCTAAACGTGAATTAAAACGTCTTCATAAACTGGAAAAATGTCGTTTAACGGAACAAGGAAGTTTAGATTTTGATGTTCAAGAATCGAATACGAGAAATCCTGACGTTAACCTAGAGAGCTCTAGTAATCATGCATGGGATGAAAATCACTGGTCTTCCGCTTCTCATTCTGAGCCTGTTCAAACTAATGAAGATTCTACCGACTCCAGTTCTAACAAACCCATCGTGCCTACCTTGGACGATAAATGTGCCAACTCGCTTCGTAAGTTTTATGCAATCCTTTTGTTTTAAGCTTGTAAATCTGCAGTTGAACCACTTTCCTATACATCCATTTTATGTTTATATATCTGTATAAGTGAAGCTTAATGGTTGGCTTGTTTGAAAGTTT]




>consensus_1874#0
CTGATGAAAAAGATTCTTATCAAGAGAATAGAGAAGCTCGTCGACTTGCTCGTAAAATGC
AGAAAAAAGCTGAGAAAAAAGCTTTAAAGAAGGCTGCTAAACGAGAAGCAAAACGATTAG
CAAAAGAGAAACGAGCTGAAAGACGTGCTCGACGAGAAGCTAAACGTGAATTAAAACGTC
TTCATAAACTGGAAAAATGTCGTTTAACGGAACAAGGAAGTTTAGATTTTGATGTTCAAG
AATCGAATACGAGAAATCCTGACGTTAACCTAGAGAGCTCTAGTAATCATGCATGGGATG
AAAATCACTGGTCTTCCGCTTCTCATTCTGAGCCTGTTCAAACTAATGAAGATTCTACCG
ACTCCAGTTCTAACAAACCCATCGTGCCTACCTTGGACGATAAATGTGCCAACTCGCTTC
GTAAGTTTTATGCAATCCTTTTGTTTTAAGCTTGTAAATCTGCAGTTGAACCACTTTCCT
ATACATCCATTTTATGTTTATATATCTGTATAAGTGAAGCTTAATGGTTGGCTTGTTTGA
AAGTTT

consensusID : consensus_1874#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 203
fasta sequence

                              [CGGGTTTATCATATTCTGAAGGTGTAGTGTTTGAGAACTTCATTTCTTTAGTTAAAAGTTCTCCATCGGAAGAAGAGTTGTCATTTTGATGAGTTGAAAATATACCATCATCATCATCATTAGGTTGATGTATGAATAGAAGCGGGTTGGCACATTTATCGTCCAAGGTAGGCACGATGGGTTTGTTAGAACTGGAGTCGGTA]

[+] EMBL CD195743             [CGGGTTTATCATATTCTGAAGGTGTAGTGTTTGAGAACTTCATTTCTTTAGTTAAAAGTTCTCCATCGGAAGAAGAGTTGTCATTTTGATGAGTTGAAAATATACCATCATCATCATCATTAGGTTGATGTATGAATAGAAGCGGGTTGGCACATTTATCGTCCAAGGTAGGCACGATGGGTTTGTTAGAACTGGAGTCGGTA]




>consensus_1874#1
CGGGTTTATCATATTCTGAAGGTGTAGTGTTTGAGAACTTCATTTCTTTAGTTAAAAGTT
CTCCATCGGAAGAAGAGTTGTCATTTTGATGAGTTGAAAATATACCATCATCATCATCAT
TAGGTTGATGTATGAATAGAAGCGGGTTGGCACATTTATCGTCCAAGGTAGGCACGATGG
GTTTGTTAGAACTGGAGTCGGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1874#0      CTGATGAAAAAGATTCTTATCAAGAGAATAGAGAAGCTCGTCGACTTGCTCGTAAAATGC 60
consensus_1874#1      ------------------------------------------------------------
                                                                                  

consensus_1874#0      AGAAAAAAGCTGAGAAAAAAGCTTTAAAGAAGGCTGCTAAACGAGAAGCAAAACGATTAG 120
consensus_1874#1      ------------------------------------------------------------
                                                                                  

consensus_1874#0      CAAAAGAGAAACGAGCTGAAAGACGTGCTCGACGAGAAGCTAAACGTGAATTAAAACGTC 180
consensus_1874#1      -----------CGGGTTTAT---CATATTCT----GAAGGTGTA-GTGTTTGAGAACTTC 41
                                 ** * * *    * *  **     **** *  * ***  * * *** **

consensus_1874#0      TTCATAAACTGGAAAAATGTCGTTTAACGGAACAAGGAAGTTTAGATTTTGATGTTCAAG 240
consensus_1874#1      AT--TTCTTTAGTTAAAAGTTCTCCATCGGAAGAAG--AGTTGTCATTTTGATG------ 91
                       *  *    * *  *** **  *  * ***** ***  ****   *********      

consensus_1874#0      AATCGAATACGAGAAATCCTGACGTTAACCTAGAGAGCTCTAGTAATCATGCATGGGATG 300
consensus_1874#1      AGTTGAAAATATACCATCATCATCATCAT-TAGGTTGATGTA-TGAATAGAAGCGGGTTG 149
                      * * *** *      *** * *   * *  ***   * * ** * *  *     *** **

consensus_1874#0      AAAATCACTGGTCTTCC--GCTTCTCATTCTGAGCCTGTTCAAACTAATGAAGATTCTAC 358
consensus_1874#1      GCA--CATTTATCGTCCAAGGTAGGCACGATGGGTTTGTTAGAACTGGAGTCGGTA---- 203
                        *  ** *  ** ***  * *   **   ** *  ****  ****   *  * *     

consensus_1874#0      CGACTCCAGTTCTAACAAACCCATCGTGCCTACCTTGGACGATAAATGTGCCAACTCGCT 418
consensus_1874#1      ------------------------------------------------------------
                                                                                  

consensus_1874#0      TCGTAAGTTTTATGCAATCCTTTTGTTTTAAGCTTGTAAATCTGCAGTTGAACCACTTTC 478
consensus_1874#1      ------------------------------------------------------------
                                                                                  

consensus_1874#0      CTATACATCCATTTTATGTTTATATATCTGTATAAGTGAAGCTTAATGGTTGGCTTGTTT 538
consensus_1874#1      ------------------------------------------------------------
                                                                                  

consensus_1874#0      GAAAGTTT 546
consensus_1874#1      --------