cluster # 1883

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Schistosoma mansoni
cluster # 1883 cluster # 1883 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1883#0 length = 937 sequences # 1

consensus_1883#1 length = 276 sequences # 1

consensusID : consensus_1883#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 937
fasta sequence

                              [CCCAGCCAGAATTCTGCACGAGGAAACATGTTTGACAACGTATAGTGTCAGTTTACAGCTGCAAAACAACGTAGGAAGTGGACTCACATAACATGATTGAAAGCCCCCTATTTTATTCAAATGTTCTTTGGTTGTGTCCCATGTACTCCCAAATTAATATGGTCCTATATTTCTCCACATATCCTGGATGCTCACAGATCAGTGTAAACTTCCATAGTTCAAAAATCACTGCTCTGTTTTGGAACCTATTGGTGCGATGTATGGGACCTAATAAGTAGTCCAGTTTCATTTCCAACTGTTAGGACTCAGCATTCTTTTTTTCTGTGTCCAGTGTTGGATTTGCCGTCTTGTTTTCCCCTTTGTTAAGCATAATGATGTATTTGAAAAAAATTACCGGATTTTATTTTATAATAGATTTGCTGTTCTTTCACTTTATGTTTATTAAATATTTCCGTCATTCTCATATCTCCTGTCACCTAAATTTTCGACCACCTTTGCTGTACTGATACTAATTATCATCCAGTAAAGCGTTGTGATCTCTTAATTGTTAGGAATATTTTAGCAAAACCCAGCTGGTTCCAAGGACCTTTATTTTACCCTTTAAGACAATGTTCTCTCCGAATTATGCTAATTAATAAAGCTGAAAGGTTNTCAGTTNTCACGTGACTTCTTTCTGGATTCTACTATCGTTTATCTAATGTCATCGTTGTTACCAGCTCAGCTTTCTGGATTACGAATTGCCATTTTTGCGCCAAGTTGTTTAACTTATTATTAANCCTATTACCATTGTTGCTGTGCTCAGTAGATAAGGGNTTTAAGAAACATNNCAGTGTCTTGTTTTCACTGTGCTCTGAGTTGGTAATAACGTNCTCTCGGTGTTCATATTTTGACCCGGTAGTACTCGATTATATTCATCTCAAAATATTGTAATCTGTGA]

[+] EMBL CD079840             [CCCAGCCAGAATTCTGCACGAGGAAACATGTTTGACAACGTATAGTGTCAGTTTACAGCTGCAAAACAACGTAGGAAGTGGACTCACATAACATGATTGAAAGCCCCCTATTTTATTCAAATGTTCTTTGGTTGTGTCCCATGTACTCCCAAATTAATATGGTCCTATATTTCTCCACATATCCTGGATGCTCACAGATCAGTGTAAACTTCCATAGTTCAAAAATCACTGCTCTGTTTTGGAACCTATTGGTGCGATGTATGGGACCTAATAAGTAGTCCAGTTTCATTTCCAACTGTTAGGACTCAGCATTCTTTTTTTCTGTGTCCAGTGTTGGATTTGCCGTCTTGTTTTCCCCTTTGTTAAGCATAATGATGTATTTGAAAAAAATTACCGGATTTTATTTTATAATAGATTTGCTGTTCTTTCACTTTATGTTTATTAAATATTTCCGTCATTCTCATATCTCCTGTCACCTAAATTTTCGACCACCTTTGCTGTACTGATACTAATTATCATCCAGTAAAGCGTTGTGATCTCTTAATTGTTAGGAATATTTTAGCAAAACCCAGCTGGTTCCAAGGACCTTTATTTTACCCTTTAAGACAATGTTCTCTCCGAATTATGCTAATTAATAAAGCTGAAAGGTTNTCAGTTNTCACGTGACTTCTTTCTGGATTCTACTATCGTTTATCTAATGTCATCGTTGTTACCAGCTCAGCTTTCTGGATTACGAATTGCCATTTTTGCGCCAAGTTGTTTAACTTATTATTAANCCTATTACCATTGTTGCTGTGCTCAGTAGATAAGGGNTTTAAGAAACATNNCAGTGTCTTGTTTTCACTGTGCTCTGAGTTGGTAATAACGTNCTCTCGGTGTTCATATTTTGACCCGGTAGTACTCGATTATATTCATCTCAAAATATTGTAATCTGTGA]




>consensus_1883#0
CCCAGCCAGAATTCTGCACGAGGAAACATGTTTGACAACGTATAGTGTCAGTTTACAGCT
GCAAAACAACGTAGGAAGTGGACTCACATAACATGATTGAAAGCCCCCTATTTTATTCAA
ATGTTCTTTGGTTGTGTCCCATGTACTCCCAAATTAATATGGTCCTATATTTCTCCACAT
ATCCTGGATGCTCACAGATCAGTGTAAACTTCCATAGTTCAAAAATCACTGCTCTGTTTT
GGAACCTATTGGTGCGATGTATGGGACCTAATAAGTAGTCCAGTTTCATTTCCAACTGTT
AGGACTCAGCATTCTTTTTTTCTGTGTCCAGTGTTGGATTTGCCGTCTTGTTTTCCCCTT
TGTTAAGCATAATGATGTATTTGAAAAAAATTACCGGATTTTATTTTATAATAGATTTGC
TGTTCTTTCACTTTATGTTTATTAAATATTTCCGTCATTCTCATATCTCCTGTCACCTAA
ATTTTCGACCACCTTTGCTGTACTGATACTAATTATCATCCAGTAAAGCGTTGTGATCTC
TTAATTGTTAGGAATATTTTAGCAAAACCCAGCTGGTTCCAAGGACCTTTATTTTACCCT
TTAAGACAATGTTCTCTCCGAATTATGCTAATTAATAAAGCTGAAAGGTTNTCAGTTNTC
ACGTGACTTCTTTCTGGATTCTACTATCGTTTATCTAATGTCATCGTTGTTACCAGCTCA
GCTTTCTGGATTACGAATTGCCATTTTTGCGCCAAGTTGTTTAACTTATTATTAANCCTA
TTACCATTGTTGCTGTGCTCAGTAGATAAGGGNTTTAAGAAACATNNCAGTGTCTTGTTT
TCACTGTGCTCTGAGTTGGTAATAACGTNCTCTCGGTGTTCATATTTTGACCCGGTAGTA
CTCGATTATATTCATCTCAAAATATTGTAATCTGTGA

consensusID : consensus_1883#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [TAGATTTGCTGTTCTTTCACTTTATGTTTATTAAATATTTCCGTCATTCTCATATCTCCTGTCACCTAAATTTTCGACCACCTTTGCTGTACTGATACTAATTATCATCCAGTAAAGCGTTGTGATCTCTTAAATGTGTAGAGAATATTTTTGACAAAAACCCGAGTGTGTTCCAAAGGCCTTTTTATTTACCCCTTAAAAAAAATTTCTCTCCGCGAATATGCGCAAATAAAAAAAGCGGAAAGGTTTTCAGTTCCCACGAGACTTCTCTCGGAG]

[+] EMBL AW400401             [TAGATTTGCTGTTCTTTCACTTTATGTTTATTAAATATTTCCGTCATTCTCATATCTCCTGTCACCTAAATTTTCGACCACCTTTGCTGTACTGATACTAATTATCATCCAGTAAAGCGTTGTGATCTCTTAAATGTGTAGAGAATATTTTTGACAAAAACCCGAGTGTGTTCCAAAGGCCTTTTTATTTACCCCTTAAAAAAAATTTCTCTCCGCGAATATGCGCAAATAAAAAAAGCGGAAAGGTTTTCAGTTCCCACGAGACTTCTCTCGGAG]




>consensus_1883#1
TAGATTTGCTGTTCTTTCACTTTATGTTTATTAAATATTTCCGTCATTCTCATATCTCCT
GTCACCTAAATTTTCGACCACCTTTGCTGTACTGATACTAATTATCATCCAGTAAAGCGT
TGTGATCTCTTAAATGTGTAGAGAATATTTTTGACAAAAACCCGAGTGTGTTCCAAAGGC
CTTTTTATTTACCCCTTAAAAAAAATTTCTCTCCGCGAATATGCGCAAATAAAAAAAGCG
GAAAGGTTTTCAGTTCCCACGAGACTTCTCTCGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1883#0      CCCAGCCAGAATTCTGCACGAGGAAACATGTTTGACAACGTATAGTGTCAGTTTACAGCT 60
consensus_1883#1      ------------------------------------------------------------
                                                                                  

consensus_1883#0      GCAAAACAACGTAGGAAGTGGACTCACATAACATGATTGAAAGCCCCCTATTTTATTCAA 120
consensus_1883#1      ------------------------------------------------------------
                                                                                  

consensus_1883#0      ATGTTCTTTGGTTGTGTCCCATGTACTCCCAAATTAATATGGTCCTATATTTCTCCACAT 180
consensus_1883#1      ------------------------------------------------------------
                                                                                  

consensus_1883#0      ATCCTGGATGCTCACAGATCAGTGTAAACTTCCATAGTTCAAAAATCACTGCTCTGTTTT 240
consensus_1883#1      ------------------------------------------------------------
                                                                                  

consensus_1883#0      GGAACCTATTGGTGCGATGTATGGGACCTAATAAGTAGTCCAGTTTCATTTCCAACTGTT 300
consensus_1883#1      ------------------------------------------------------------
                                                                                  

consensus_1883#0      AGGACTCAGCATTCTTTTTTTCTGTGTCCAGTGTTGGATTTGCCGTCTTGTTTTCCCCTT 360
consensus_1883#1      ------------------------------------------------------------
                                                                                  

consensus_1883#0      TGTTAAGCATAATGATGTATTTGAAAAAAATTACCGGATTTTATTTTATAATAGATTTGC 420
consensus_1883#1      ---------------------------------------------------TAGATTTGC 9
                                                                         *********

consensus_1883#0      TGTTCTTTCACTTTATGTTTATTAAATATTTCCGTCATTCTCATATCTCCTGTCACCTAA 480
consensus_1883#1      TGTTCTTTCACTTTATGTTTATTAAATATTTCCGTCATTCTCATATCTCCTGTCACCTAA 69
                      ************************************************************

consensus_1883#0      ATTTTCGACCACCTTTGCTGTACTGATACTAATTATCATCCAGTAAAGCGTTGTGATCTC 540
consensus_1883#1      ATTTTCGACCACCTTTGCTGTACTGATACTAATTATCATCCAGTAAAGCGTTGTGATCTC 129
                      ************************************************************

consensus_1883#0      TTAATTGT-TAG-GAATATTTTAGC--AAAACCCAGCTG-GTTCCAAGGACCTTTAT-TT 594
consensus_1883#1      TTAAATGTGTAGAGAATATTTTTGACAAAAACCCGAGTGTGTTCCAAAGGCCTTTTTATT 189
                      **** *** *** ********* *   *******   ** ******* * ***** * **

consensus_1883#0      TACCCTTTAAGACAATGTTCTCTCCG--AAT-TATGCTAATTAATAAAGCTGAAAGGTTN 651
consensus_1883#1      TACCCCTTAAAAAAAATTTCTCTCCGCGAATATGCGCAAATAAAAAAAGCGGAAAGGTTT 249
                      ***** **** * **  *********  *** *  ** *** ** ***** ******** 

consensus_1883#0      TCAGTTNTCACGTGACTTCTTTCTGGATTCTACTATCGTTTATCTAATGTCATCGTTGTT 711
consensus_1883#1      TCAGTTCCCACGAGACTTCTCTCGGAG--------------------------------- 276
                      ******  **** ******* ** *                                   

consensus_1883#0      ACCAGCTCAGCTTTCTGGATTACGAATTGCCATTTTTGCGCCAAGTTGTTTAACTTATTA 771
consensus_1883#1      ------------------------------------------------------------
                                                                                  

consensus_1883#0      TTAANCCTATTACCATTGTTGCTGTGCTCAGTAGATAAGGGNTTTAAGAAACATNNCAGT 831
consensus_1883#1      ------------------------------------------------------------
                                                                                  

consensus_1883#0      GTCTTGTTTTCACTGTGCTCTGAGTTGGTAATAACGTNCTCTCGGTGTTCATATTTTGAC 891
consensus_1883#1      ------------------------------------------------------------
                                                                                  

consensus_1883#0      CCGGTAGTACTCGATTATATTCATCTCAAAATATTGTAATCTGTGA 937
consensus_1883#1      ----------------------------------------------