cluster # 1887

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Schistosoma mansoni
cluster # 1887 cluster # 1887 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1887#0 length = 779 sequences # 1

consensus_1887#1 length = 465 sequences # 1

consensusID : consensus_1887#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 779
fasta sequence

                              [AATAATAGGTTTTGACTAGCTGAAGAATCCAGAACATGCATTTCATTCTATTTGGGAATCTGCAGTATGAACATCAACACCGGGATCCCATATACTACATCCAGCTGATGATCCCCAAATAGAATGAAACATAGGCCCTCGATTGCACTACTGCTGACAATCTAAATATCGTCCGAATGGTTTTTAGGATCATTCTTTTGGATCAGTCCTCTTCATATGTATTGTTTATTATATAAAGCGACAATTAAATAGCTATCAGTTCTTCAACGATAAATGAAATAATGACACAATGACTTTCCACAATAATTGTTTCAACTTTAATCACAAAATCTTAGCAAATGATAATTTNCACGGTTTGGGGCTCTTCATAAAAAANTCTCATGTTACTATTGTAATTTTCAGTTTTCGAAACGTCCGATAATGATGTTGATTTGTCAACATCCTCTAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTACTGGACAATTACAGAAACCTGTCAGTTCAATAACTACGGAAGAGTCTGGACCTTCTGGGAATCTGACCAATACATCTACTAATTATTACAACTAGTTACTTTTACTACTACATCAACTTCAAATCGTTTAAATTCCTAATCAACTGCTAGTGATACGTTGTTTGGAAACCGTTTATTGCTTACACCAAAACCCCATTCATACTTCTAATAAGGCAGGGGTCAGTCCAACTCAAAATTCGGGGCACACTTTCACAAAGTCCCCTTCACAAATTTGTTGCAAAATTGGTTTTGTTAAAAAA]

[+] EMBL CD079858             [AATAATAGGTTTTGACTAGCTGAAGAATCCAGAACATGCATTTCATTCTATTTGGGAATCTGCAGTATGAACATCAACACCGGGATCCCATATACTACATCCAGCTGATGATCCCCAAATAGAATGAAACATAGGCCCTCGATTGCACTACTGCTGACAATCTAAATATCGTCCGAATGGTTTTTAGGATCATTCTTTTGGATCAGTCCTCTTCATATGTATTGTTTATTATATAAAGCGACAATTAAATAGCTATCAGTTCTTCAACGATAAATGAAATAATGACACAATGACTTTCCACAATAATTGTTTCAACTTTAATCACAAAATCTTAGCAAATGATAATTTNCACGGTTTGGGGCTCTTCATAAAAAANTCTCATGTTACTATTGTAATTTTCAGTTTTCGAAACGTCCGATAATGATGTTGATTTGTCAACATCCTCTAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTACTGGACAATTACAGAAACCTGTCAGTTCAATAACTACGGAAGAGTCTGGACCTTCTGGGAATCTGACCAATACATCTACTAATTATTACAACTAGTTACTTTTACTACTACATCAACTTCAAATCGTTTAAATTCCTAATCAACTGCTAGTGATACGTTGTTTGGAAACCGTTTATTGCTTACACCAAAACCCCATTCATACTTCTAATAAGGCAGGGGTCAGTCCAACTCAAAATTCGGGGCACACTTTCACAAAGTCCCCTTCACAAATTTGTTGCAAAATTGGTTTTGTTAAAAAA]




>consensus_1887#0
AATAATAGGTTTTGACTAGCTGAAGAATCCAGAACATGCATTTCATTCTATTTGGGAATC
TGCAGTATGAACATCAACACCGGGATCCCATATACTACATCCAGCTGATGATCCCCAAAT
AGAATGAAACATAGGCCCTCGATTGCACTACTGCTGACAATCTAAATATCGTCCGAATGG
TTTTTAGGATCATTCTTTTGGATCAGTCCTCTTCATATGTATTGTTTATTATATAAAGCG
ACAATTAAATAGCTATCAGTTCTTCAACGATAAATGAAATAATGACACAATGACTTTCCA
CAATAATTGTTTCAACTTTAATCACAAAATCTTAGCAAATGATAATTTNCACGGTTTGGG
GCTCTTCATAAAAAANTCTCATGTTACTATTGTAATTTTCAGTTTTCGAAACGTCCGATA
ATGATGTTGATTTGTCAACATCCTCTAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTA
CTGGACAATTACAGAAACCTGTCAGTTCAATAACTACGGAAGAGTCTGGACCTTCTGGGA
ATCTGACCAATACATCTACTAATTATTACAACTAGTTACTTTTACTACTACATCAACTTC
AAATCGTTTAAATTCCTAATCAACTGCTAGTGATACGTTGTTTGGAAACCGTTTATTGCT
TACACCAAAACCCCATTCATACTTCTAATAAGGCAGGGGTCAGTCCAACTCAAAATTCGG
GGCACACTTTCACAAAGTCCCCTTCACAAATTTGTTGCAAAATTGGTTTTGTTAAAAAA

consensusID : consensus_1887#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [TAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTACTGGACAATTACAGAAACCTGTCAGTTCAATAACTACGGAAGAGTCTGGACCTTCTGGGAATCTGACCAATACATCTACTAAATTATTACAACTAGTTACTTCTACTACTACATCAACCTCAGATCGTTTAAATCCTAATCAAACTGCTAGTGATCGTTTGTTTGGTAAGCGTCTTATTGCTTACAACAGAAACGCATCACATACTCCTAATAATGCAGTGTCAAGTACAACTCAGAATTCAGGGACAACTCATCACCAGAGTCCAGCTCCAACAAATACATCAATTAATACTGCAACTCCTTATCGATATGCTGTTGTACGAGGTTCAGCAGATGGAAAACAATATGTTTTGATTAGCAATCCTCGTATGGTTGATCAAACAGTTCATGAACAACCGGTTGCAACGTTGACTACAACTGTAAATGATGC]

[-] EMBL CD117721             [TAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTACTGGACAATTACAGAAACCTGTCAGTTCAATAACTACGGAAGAGTCTGGACCTTCTGGGAATCTGACCAATACATCTACTAAATTATTACAACTAGTTACTTCTACTACTACATCAACCTCAGATCGTTTAAATCCTAATCAAACTGCTAGTGATCGTTTGTTTGGTAAGCGTCTTATTGCTTACAACAGAAACGCATCACATACTCCTAATAATGCAGTGTCAAGTACAACTCAGAATTCAGGGACAACTCATCACCAGAGTCCAGCTCCAACAAATACATCAATTAATACTGCAACTCCTTATCGATATGCTGTTGTACGAGGTTCAGCAGATGGAAAACAATATGTTTTGATTAGCAATCCTCGTATGGTTGATCAAACAGTTCATGAACAACCGGTTGCAACGTTGACTACAACTGTAAATGATGC]




>consensus_1887#1
TAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTACTGGACAATTACAGAAACCTGTCAG
TTCAATAACTACGGAAGAGTCTGGACCTTCTGGGAATCTGACCAATACATCTACTAAATT
ATTACAACTAGTTACTTCTACTACTACATCAACCTCAGATCGTTTAAATCCTAATCAAAC
TGCTAGTGATCGTTTGTTTGGTAAGCGTCTTATTGCTTACAACAGAAACGCATCACATAC
TCCTAATAATGCAGTGTCAAGTACAACTCAGAATTCAGGGACAACTCATCACCAGAGTCC
AGCTCCAACAAATACATCAATTAATACTGCAACTCCTTATCGATATGCTGTTGTACGAGG
TTCAGCAGATGGAAAACAATATGTTTTGATTAGCAATCCTCGTATGGTTGATCAAACAGT
TCATGAACAACCGGTTGCAACGTTGACTACAACTGTAAATGATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1887#0      AATAATAGGTTTTGACTAGCTGAAGAATCCAGAACATGCATTTCATTCTATTTGGGAATC 60
consensus_1887#1      ------------------------------------------------------------
                                                                                  

consensus_1887#0      TGCAGTATGAACATCAACACCGGGATCCCATATACTACATCCAGCTGATGATCCCCAAAT 120
consensus_1887#1      ------------------------------------------------------------
                                                                                  

consensus_1887#0      AGAATGAAACATAGGCCCTCGATTGCACTACTGCTGACAATCTAAATATCGTCCGAATGG 180
consensus_1887#1      ------------------------------------------------------------
                                                                                  

consensus_1887#0      TTTTTAGGATCATTCTTTTGGATCAGTCCTCTTCATATGTATTGTTTATTATATAAAGCG 240
consensus_1887#1      ------------------------------------------------------------
                                                                                  

consensus_1887#0      ACAATTAAATAGCTATCAGTTCTTCAACGATAAATGAAATAATGACACAATGACTTTCCA 300
consensus_1887#1      ------------------------------------------------------------
                                                                                  

consensus_1887#0      CAATAATTGTTTCAACTTTAATCACAAAATCTTAGCAAATGATAATTTNCACGGTTTGGG 360
consensus_1887#1      ------------------------------------------------------------
                                                                                  

consensus_1887#0      GCTCTTCATAAAAAANTCTCATGTTACTATTGTAATTTTCAGTTTTCGAAACGTCCGATA 420
consensus_1887#1      ------------------------------------------------------------
                                                                                  

consensus_1887#0      ATGATGTTGATTTGTCAACATCCTCTAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTA 480
consensus_1887#1      -------------------------TAGTCGTAATATTAGTGTATTTAGTCCTGGCAGTA 35
                                               ***********************************

consensus_1887#0      CTGGACAATTACAGAAACCTGTCAGTTCAATAACTACGGAAGAGTCTGGACCTTCTGGGA 540
consensus_1887#1      CTGGACAATTACAGAAACCTGTCAGTTCAATAACTACGGAAGAGTCTGGACCTTCTGGGA 95
                      ************************************************************

consensus_1887#0      ATCTGACCAATACATCTACTAA-TTATTACAACTAGTTACTTTTACTACTACATCAACTT 599
consensus_1887#1      ATCTGACCAATACATCTACTAAATTATTACAACTAGTTACTTCTACTACTACATCAACCT 155
                      ********************** ******************* *************** *

consensus_1887#0      CAAATCGTTTAAATTCCTAATCAACTGCTAGTGATACGTTGTTTGGAAACCGT-TTATTG 658
consensus_1887#1      CAGATCGTTTAAATCCTAATCAAACTGCTAGTGATCGTTTGTTTGGTAAGCGTCTTATTG 215
                      ** *********** *  *   *************   ******** ** *** ******

consensus_1887#0      CTTACACCAAAACCCCATT-CATACTTCTAATAAGGCAGGGGTCAGTCCAACTCAAAATT 717
consensus_1887#1      CTTACAACAGAAACGCATCACATACTCCTAATAATGCAGTGTCAAGTACAACTCAGAATT 275
                      ****** ** ** * ***  ****** ******* **** *   *** ******* ****

consensus_1887#0      CGGGGCACACTT-TCAC-AAAGTCCCCTTC--ACAAATTTGTTG--CAAAATTGGTTTTG 771
consensus_1887#1      CAGGGACAACTCATCACCAGAGTCCAGCTCCAACAAATACATCAATTAATACTGCAACTC 335
                      * ***   ***  **** * *****   **  ******   *     ** * **    * 

consensus_1887#0      TTAAAAAA---------------------------------------------------- 779
consensus_1887#1      CTTATCGATATGCTGTTGTACGAGGTTCAGCAGATGGAAAACAATATGTTTTGATTAGCA 395
                       * *   *                                                    

consensus_1887#0      ------------------------------------------------------------
consensus_1887#1      ATCCTCGTATGGTTGATCAAACAGTTCATGAACAACCGGTTGCAACGTTGACTACAACTG 455
                                                                                  

consensus_1887#0      ----------
consensus_1887#1      TAAATGATGC 465