cluster # 1889

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1889 cluster # 1889 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1889#0 length = 408 sequences # 1

consensus_1889#1 length = 235 sequences # 1

consensusID : consensus_1889#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence

                              [GTTACCCTCACTTTATTGTCTCTGAAATAAGTTCTGATGGATGCAAAGCCTCAATTTAAATTCTCTCACTCCTGCCCAAAAGGGACAATTAATGGTAGCAAATGCTAACAGAAGTTGCTTTGGCGAGTGCCATACAGCTTTTAAAGGTGGATCTTTATGTCCTAATCCCCAATTATTAGTAGAAAATGTCCGATAAATGCTTCAAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACAATTCTGAACAGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAGTCTCTAAAGTTTTCGCATCACGCATCAAACGTGAAGCCGAAAAGTTGTAAAAATCCCAACATTTAACAGAAGTAACGTGTAATGTATATAGTTTTTTAGATACAGTAT]

[+] EMBL CD079863             [GTTACCCTCACTTTATTGTCTCTGAAATAAGTTCTGATGGATGCAAAGCCTCAATTTAAATTCTCTCACTCCTGCCCAAAAGGGACAATTAATGGTAGCAAATGCTAACAGAAGTTGCTTTGGCGAGTGCCATACAGCTTTTAAAGGTGGATCTTTATGTCCTAATCCCCAATTATTAGTAGAAAATGTCCGATAAATGCTTCAAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACAATTCTGAACAGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAGTCTCTAAAGTTTTCGCATCACGCATCAAACGTGAAGCCGAAAAGTTGTAAAAATCCCAACATTTAACAGAAGTAACGTGTAATGTATATAGTTTTTTAGATACAGTAT]




>consensus_1889#0
GTTACCCTCACTTTATTGTCTCTGAAATAAGTTCTGATGGATGCAAAGCCTCAATTTAAA
TTCTCTCACTCCTGCCCAAAAGGGACAATTAATGGTAGCAAATGCTAACAGAAGTTGCTT
TGGCGAGTGCCATACAGCTTTTAAAGGTGGATCTTTATGTCCTAATCCCCAATTATTAGT
AGAAAATGTCCGATAAATGCTTCAAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACA
ATTCTGAACAGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAG
TCTCTAAAGTTTTCGCATCACGCATCAAACGTGAAGCCGAAAAGTTGTAAAAATCCCAAC
ATTTAACAGAAGTAACGTGTAATGTATATAGTTTTTTAGATACAGTAT

consensusID : consensus_1889#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 235
fasta sequence

                              [TGGAGCAAATGCGAACAGAAGTTGCTTTGGCGAGTGCCAGAGAGCTTTTAGAGAAAATGTCGGATAAATGCTTCGAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACAATTCTGAACAGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAGTCTCTAAAGTTTTCGCATCACGCATCAAACGTGAAGCCGAGAAGTTGTAAAAATCCCAACATTT]

[-] EMBL CD162879             [TGGAGCAAATGCGAACAGAAGTTGCTTTGGCGAGTGCCAGAGAGCTTTTAGAGAAAATGTCGGATAAATGCTTCGAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACAATTCTGAACAGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAGTCTCTAAAGTTTTCGCATCACGCATCAAACGTGAAGCCGAGAAGTTGTAAAAATCCCAACATTT]




>consensus_1889#1
TGGAGCAAATGCGAACAGAAGTTGCTTTGGCGAGTGCCAGAGAGCTTTTAGAGAAAATGT
CGGATAAATGCTTCGAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACAATTCTGAAC
AGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAGTCTCTAAAG
TTTTCGCATCACGCATCAAACGTGAAGCCGAGAAGTTGTAAAAATCCCAACATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1889#0      GTTACCCTCACTTTATTGTCTCTGAAATAAGTTCTGATGGATGCAAAGCCTCAATTTAAA 60
consensus_1889#1      ------------------------------------------------------------
                                                                                  

consensus_1889#0      TTCTCTCACTCCTGCCCAAAAGGGACAATTAATGGTAGCAAATGCTAACAGAAGTTGCTT 120
consensus_1889#1      --------------------------------TGG-AGCAAATGCGAACAGAAGTTGCTT 27
                                                      *** ********* **************

consensus_1889#0      TGGCGAGTGCCATACAGCTTTTAAAGGTGGATCTTTATGTCCTAATCCCCAATTATTAGT 180
consensus_1889#1      TGGCGAGTGCCAGAGAGCTTTTAGAG---------------------------------- 53
                      ************ * ******** **                                  

consensus_1889#0      AGAAAATGTCCGATAAATGCTTCAAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACA 240
consensus_1889#1      --AAAATGTCGGATAAATGCTTCGAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACA 111
                        ******** ************ ************************************

consensus_1889#0      ATTCTGAACAGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAG 300
consensus_1889#1      ATTCTGAACAGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAG 171
                      ************************************************************

consensus_1889#0      TCTCTAAAGTTTTCGCATCACGCATCAAACGTGAAGCCGAAAAGTTGTAAAAATCCCAAC 360
consensus_1889#1      TCTCTAAAGTTTTCGCATCACGCATCAAACGTGAAGCCGAGAAGTTGTAAAAATCCCAAC 231
                      **************************************** *******************

consensus_1889#0      ATTTAACAGAAGTAACGTGTAATGTATATAGTTTTTTAGATACAGTAT 408
consensus_1889#1      ATTT-------------------------------------------- 235
                      ****