These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [GTTACCCTCACTTTATTGTCTCTGAAATAAGTTCTGATGGATGCAAAGCCTCAATTTAAATTCTCTCACTCCTGCCCAAAAGGGACAATTAATGGTAGCAAATGCTAACAGAAGTTGCTTTGGCGAGTGCCATACAGCTTTTAAAGGTGGATCTTTATGTCCTAATCCCCAATTATTAGTAGAAAATGTCCGATAAATGCTTCAAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACAATTCTGAACAGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAGTCTCTAAAGTTTTCGCATCACGCATCAAACGTGAAGCCGAAAAGTTGTAAAAATCCCAACATTTAACAGAAGTAACGTGTAATGTATATAGTTTTTTAGATACAGTAT] [+] EMBL CD079863 [GTTACCCTCACTTTATTGTCTCTGAAATAAGTTCTGATGGATGCAAAGCCTCAATTTAAATTCTCTCACTCCTGCCCAAAAGGGACAATTAATGGTAGCAAATGCTAACAGAAGTTGCTTTGGCGAGTGCCATACAGCTTTTAAAGGTGGATCTTTATGTCCTAATCCCCAATTATTAGTAGAAAATGTCCGATAAATGCTTCAAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACAATTCTGAACAGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAGTCTCTAAAGTTTTCGCATCACGCATCAAACGTGAAGCCGAAAAGTTGTAAAAATCCCAACATTTAACAGAAGTAACGTGTAATGTATATAGTTTTTTAGATACAGTAT] consensusID : consensus_1889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence [TGGAGCAAATGCGAACAGAAGTTGCTTTGGCGAGTGCCAGAGAGCTTTTAGAGAAAATGTCGGATAAATGCTTCGAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACAATTCTGAACAGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAGTCTCTAAAGTTTTCGCATCACGCATCAAACGTGAAGCCGAGAAGTTGTAAAAATCCCAACATTT] [-] EMBL CD162879 [TGGAGCAAATGCGAACAGAAGTTGCTTTGGCGAGTGCCAGAGAGCTTTTAGAGAAAATGTCGGATAAATGCTTCGAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACAATTCTGAACAGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAGTCTCTAAAGTTTTCGCATCACGCATCAAACGTGAAGCCGAGAAGTTGTAAAAATCCCAACATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1889#0 GTTACCCTCACTTTATTGTCTCTGAAATAAGTTCTGATGGATGCAAAGCCTCAATTTAAA 60 consensus_1889#1 ------------------------------------------------------------ consensus_1889#0 TTCTCTCACTCCTGCCCAAAAGGGACAATTAATGGTAGCAAATGCTAACAGAAGTTGCTT 120 consensus_1889#1 --------------------------------TGG-AGCAAATGCGAACAGAAGTTGCTT 27 *** ********* ************** consensus_1889#0 TGGCGAGTGCCATACAGCTTTTAAAGGTGGATCTTTATGTCCTAATCCCCAATTATTAGT 180 consensus_1889#1 TGGCGAGTGCCAGAGAGCTTTTAGAG---------------------------------- 53 ************ * ******** ** consensus_1889#0 AGAAAATGTCCGATAAATGCTTCAAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACA 240 consensus_1889#1 --AAAATGTCGGATAAATGCTTCGAGAAATGTGTCACTAAGCCAGGAACAAGCCTGGACA 111 ******** ************ ************************************ consensus_1889#0 ATTCTGAACAGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAG 300 consensus_1889#1 ATTCTGAACAGAAATGCGTAGGTTTATGCATGGATCGCTACGTAGATGCTTGGAATCTAG 171 ************************************************************ consensus_1889#0 TCTCTAAAGTTTTCGCATCACGCATCAAACGTGAAGCCGAAAAGTTGTAAAAATCCCAAC 360 consensus_1889#1 TCTCTAAAGTTTTCGCATCACGCATCAAACGTGAAGCCGAGAAGTTGTAAAAATCCCAAC 231 **************************************** ******************* consensus_1889#0 ATTTAACAGAAGTAACGTGTAATGTATATAGTTTTTTAGATACAGTAT 408 consensus_1889#1 ATTT-------------------------------------------- 235 **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||