cluster # 1897

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Schistosoma mansoni
cluster # 1897 cluster # 1897 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1897#0 length = 688 sequences # 1

consensus_1897#1 length = 381 sequences # 1

consensusID : consensus_1897#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 688
fasta sequence

                              [GGGCCAGAATTCGGCACGAGGTTTAAACCTGTCTGGTCTTGACGTTAAAATGGTCTATCTAGACACCGATTCTGAAATAAAAGACTTCATAAAGGTGCTAGACCCAAGCAGTACTGACGGTGTTTTAGTTGTTGGGGACGACAATATGATCCAGAAAGCAGTTACAAGTTTGTTATCTCGGGACGATTTTAAGACTACTCCTCTGTGGTCATTGCCGATCGGAGCGGTGCCCGTAGGTATTTGGAATGGGCTTATAAACTCTATGTGTGAGAAAACAGTTGTCCCTAAATGGTTTTATAACGTTTTACAATCTGTCCTACAAAACAATACTAAAAGAAGAAATGTTTTGGAAGCTAAAGTTGTTTCAGACGATAGTCAACCAATTGAACAATCAAAGACGTCATCTGCAAATACTTATGCTTTATTAGGTATTGAATGGAATATTTGGAGAGATATAGAACTTGGTGGGGGTTTTGGTGCTAGTGATAGGCATAAAAAACCAACAAATCCTAACGATCACCGTGGTGTACTCACAACACTTTCAGTTTCATCTCCTATATCGTGGAGTCGTAATTTTGGTGCGTTATGGAGATCTACTTGGTATTGGCTTCGATCATCTGANAACAATACTCAAATATATCCTCATGACGATTCTAAAACTTCATCGAATTTTTTCGCAGATTCTTCA]

[+] EMBL CD079944             [GGGCCAGAATTCGGCACGAGGTTTAAACCTGTCTGGTCTTGACGTTAAAATGGTCTATCTAGACACCGATTCTGAAATAAAAGACTTCATAAAGGTGCTAGACCCAAGCAGTACTGACGGTGTTTTAGTTGTTGGGGACGACAATATGATCCAGAAAGCAGTTACAAGTTTGTTATCTCGGGACGATTTTAAGACTACTCCTCTGTGGTCATTGCCGATCGGAGCGGTGCCCGTAGGTATTTGGAATGGGCTTATAAACTCTATGTGTGAGAAAACAGTTGTCCCTAAATGGTTTTATAACGTTTTACAATCTGTCCTACAAAACAATACTAAAAGAAGAAATGTTTTGGAAGCTAAAGTTGTTTCAGACGATAGTCAACCAATTGAACAATCAAAGACGTCATCTGCAAATACTTATGCTTTATTAGGTATTGAATGGAATATTTGGAGAGATATAGAACTTGGTGGGGGTTTTGGTGCTAGTGATAGGCATAAAAAACCAACAAATCCTAACGATCACCGTGGTGTACTCACAACACTTTCAGTTTCATCTCCTATATCGTGGAGTCGTAATTTTGGTGCGTTATGGAGATCTACTTGGTATTGGCTTCGATCATCTGANAACAATACTCAAATATATCCTCATGACGATTCTAAAACTTCATCGAATTTTTTCGCAGATTCTTCA]




>consensus_1897#0
GGGCCAGAATTCGGCACGAGGTTTAAACCTGTCTGGTCTTGACGTTAAAATGGTCTATCT
AGACACCGATTCTGAAATAAAAGACTTCATAAAGGTGCTAGACCCAAGCAGTACTGACGG
TGTTTTAGTTGTTGGGGACGACAATATGATCCAGAAAGCAGTTACAAGTTTGTTATCTCG
GGACGATTTTAAGACTACTCCTCTGTGGTCATTGCCGATCGGAGCGGTGCCCGTAGGTAT
TTGGAATGGGCTTATAAACTCTATGTGTGAGAAAACAGTTGTCCCTAAATGGTTTTATAA
CGTTTTACAATCTGTCCTACAAAACAATACTAAAAGAAGAAATGTTTTGGAAGCTAAAGT
TGTTTCAGACGATAGTCAACCAATTGAACAATCAAAGACGTCATCTGCAAATACTTATGC
TTTATTAGGTATTGAATGGAATATTTGGAGAGATATAGAACTTGGTGGGGGTTTTGGTGC
TAGTGATAGGCATAAAAAACCAACAAATCCTAACGATCACCGTGGTGTACTCACAACACT
TTCAGTTTCATCTCCTATATCGTGGAGTCGTAATTTTGGTGCGTTATGGAGATCTACTTG
GTATTGGCTTCGATCATCTGANAACAATACTCAAATATATCCTCATGACGATTCTAAAAC
TTCATCGAATTTTTTCGCAGATTCTTCA

consensusID : consensus_1897#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [AACAATGGGCTTACTAAATTATTTGGAAATCAATTGATTAGTACCAGTAATTATTAGTACTTGTTCTTAATCCTCAGGAAAATAGAATCGAAAACCTTTTCGGCTTATTGTGTAAACACCCTTGGTGGTATATACCTTCAATCTGAATCCTACATTCATCCTGGCTACATCACAAAGTGATCTATGCCATTTGAAAAACTTTTTGAAATAAGCAATCTAATCTACGAAGGACCATTCTTTTTACATATTTCTTACTTATAATGTCTTGAAATCGTTTGTTTATAACTTCTCAAATAGGATAGTCAACCAATTGAACAATCAAAGACGTCATCTGCAAATACTTATGCTTTATTAGGTATTGAATGGAATATTTGGAGAGAT]

[+] EMBL CD144377             [AACAATGGGCTTACTAAATTATTTGGAAATCAATTGATTAGTACCAGTAATTATTAGTACTTGTTCTTAATCCTCAGGAAAATAGAATCGAAAACCTTTTCGGCTTATTGTGTAAACACCCTTGGTGGTATATACCTTCAATCTGAATCCTACATTCATCCTGGCTACATCACAAAGTGATCTATGCCATTTGAAAAACTTTTTGAAATAAGCAATCTAATCTACGAAGGACCATTCTTTTTACATATTTCTTACTTATAATGTCTTGAAATCGTTTGTTTATAACTTCTCAAATAGGATAGTCAACCAATTGAACAATCAAAGACGTCATCTGCAAATACTTATGCTTTATTAGGTATTGAATGGAATATTTGGAGAGAT]




>consensus_1897#1
AACAATGGGCTTACTAAATTATTTGGAAATCAATTGATTAGTACCAGTAATTATTAGTAC
TTGTTCTTAATCCTCAGGAAAATAGAATCGAAAACCTTTTCGGCTTATTGTGTAAACACC
CTTGGTGGTATATACCTTCAATCTGAATCCTACATTCATCCTGGCTACATCACAAAGTGA
TCTATGCCATTTGAAAAACTTTTTGAAATAAGCAATCTAATCTACGAAGGACCATTCTTT
TTACATATTTCTTACTTATAATGTCTTGAAATCGTTTGTTTATAACTTCTCAAATAGGAT
AGTCAACCAATTGAACAATCAAAGACGTCATCTGCAAATACTTATGCTTTATTAGGTATT
GAATGGAATATTTGGAGAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1897#0      GGGCCAGAATTCGGCACGAGGTTTAAACCTGTCTGGTCTTGACGTTAAAATGGTCTATCT 60
consensus_1897#1      ---------------------------------------------AACAATGGGCTTACT 15
                                                                    * ***** **  **

consensus_1897#0      AGACACCGATTCTGAAATAAAAGACTTCATAAAGGTGCTAGACCCAAGCAGTACTGACGG 120
consensus_1897#1      AAATT---ATTTGGAAATCAA----TTGATTA--GTACCAGTAATTATTAGTACTTGT-- 64
                      * *     ***  ***** **    ** ** *  ** * **     *  ******     

consensus_1897#0      TGTTTTAGTTGTTGGGGACGACAATATGATCCAGAAAGCAGTTACAAGTTTGTTATCTCG 180
consensus_1897#1      --TCTTAATCCTCAGGAA----AATAGAATC--GAAAACCTTTTCG-GCTTATTGTGTAA 115
                        * *** *  *  ** *    ****  ***  **** *  ** *  * ** ** * *  

consensus_1897#0      GGACGATTTTAAGACTACTCCT-----CTGTGGTCATTGCCGATCGGAGCGGTGCCCGTA 235
consensus_1897#1      ACACCCTTGGTGGTATATACCTTCAATCTGAATCCTACATTCATCCTGGCTACATCACAA 175
                        **  **    *  **  ***     ***    *       ***   **     *   *

consensus_1897#0      GGTATTTGGAATGGGCTTATAAACTCTATGTGTGAGAAAACAGTTGTCCCTAAATGGTTT 295
consensus_1897#1      AGTGATCTATGCCATTTGAAAAACTTTTTG---AAATAAGCAATCTAATCTACGAAGGAC 232
                       **  *          * * ***** * **    *  ** ** *     ***    *   

consensus_1897#0      TATAACGTTTTACAATCTGTCCTACAAAACAATACTAAAAGAAGAAATGTTTTGGAAGCT 355
consensus_1897#1      CATT-CTTTTTACA-TATTTCTTACTTA-TAATGTCTTGAAATCGTTTGTTT-------A 282
                       **  * ******* * * ** ***  *  ***      * *     *****        

consensus_1897#0      AAAGTTGTTTCAGACGATAGTCAACCAATTGAACAATCAAAGACGTCATCTGCAAATACT 415
consensus_1897#1      TAACTTCTCAAATAGGATAGTCAACCAATTGAACAATCAAAGACGTCATCTGCAAATACT 342
                       ** ** *   * * *********************************************

consensus_1897#0      TATGCTTTATTAGGTATTGAATGGAATATTTGGAGAGATATAGAACTTGGTGGGGGTTTT 475
consensus_1897#1      TATGCTTTATTAGGTATTGAATGGAATATTTGGAGAGAT--------------------- 381
                      ***************************************                     

consensus_1897#0      GGTGCTAGTGATAGGCATAAAAAACCAACAAATCCTAACGATCACCGTGGTGTACTCACA 535
consensus_1897#1      ------------------------------------------------------------
                                                                                  

consensus_1897#0      ACACTTTCAGTTTCATCTCCTATATCGTGGAGTCGTAATTTTGGTGCGTTATGGAGATCT 595
consensus_1897#1      ------------------------------------------------------------
                                                                                  

consensus_1897#0      ACTTGGTATTGGCTTCGATCATCTGANAACAATACTCAAATATATCCTCATGACGATTCT 655
consensus_1897#1      ------------------------------------------------------------
                                                                                  

consensus_1897#0      AAAACTTCATCGAATTTTTTCGCAGATTCTTCA 688
consensus_1897#1      ---------------------------------